Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

42490649 .. 42491102

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG388800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCAGAAGAAGTGCTGTTGCTCAGAGAAGAGAGGAGAATACGTAAAGCTGCTCTTATCCGCAATTTTGTTGATCGCGAGAAAGAACGTCCAACTCTTGGCCCTAATGATTTTCTTGTAGCAGAGGATACTTCAACAAAAACTTCAACTTTTCCTAGGAAGACTGGGAATATAAAAAAAGGATCACAATCTGGAAAGAAAAACAATATCTCTTCGAATTGTCAAGTTATAAAGAAGATCAGACCCAATAGGCGTAAAAACTACGATCAAATTTGTTCTGATGAGGCTGACATATGTAATGGGGATGATGCCTCAGATTGGGATGATACTATTGCTTGCTTTGCACATACAGTAAAGAAGATAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

132

Amino Acids

15.33

Weight (kDa)

9.54

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	125, 345
AgsI	TTSAA	2 cut(s)	162, 174
AluBI	AGCT	2 cut(s)	77, 394
AluI	AGCT	2 cut(s)	77, 394
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	297
AspA2I	CCTAGG	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	242
AvrII	CCTAGG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	78
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 345
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	337, 355
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	125, 345
BseMII	CTCAG	2 cut(s)	64, 354
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	25, 76
BseXI	GCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	125, 345
BsnI	GGCC	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	100, 209, 264, 292
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	63, 353
BspFNI	CGCG	1 cut(s)	105
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	4 cut(s)	100, 209, 264, 292
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	51, 244
BstBAI	YACGTR	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	50, 340
BstF5I	GGATG	2 cut(s)	337, 355
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	4 cut(s)	103, 212, 267, 295
BstMBI	GATC	4 cut(s)	100, 209, 264, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSNI	TACGTA	1 cut(s)	71
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	337, 355
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	128
CviJI	RGCY	4 cut(s)	77, 129, 314, 394
CviKI_1	RGCY	4 cut(s)	77, 129, 314, 394
DdeI	CTNAG	2 cut(s)	50, 340
DpnI	GATC	4 cut(s)	102, 211, 266, 294
DpnII	GATC	4 cut(s)	100, 209, 264, 292
Eam1104I	CTCTTC	2 cut(s)	51, 244
EarI	CTCTTC	2 cut(s)	51, 244
Eco105I	TACGTA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaiI	YATR	5 cut(s)	200, 257, 320, 322, 375
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	344, 362
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	392
Hpy188I	TCNGA	4 cut(s)	53, 269, 307, 343
Hpy188III	TCNNGA	3 cut(s)	32, 104, 219
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	2 cut(s)	70, 115
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	50, 340
HpySE526I	ACGT	2 cut(s)	70, 115
Kzo9I	GATC	4 cut(s)	100, 209, 264, 292
LpnPI	CCDG	3 cut(s)	45, 177, 204
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	70, 115
MalI	GATC	4 cut(s)	102, 211, 266, 294
MboI	GATC	4 cut(s)	100, 209, 264, 292
MboII	GAAGA	6 cut(s)	47, 68, 199, 231, 274, 397
MluCI	AATT	3 cut(s)	91, 244, 297
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	3, 54, 145, 304, 349
MseI	TTAA	1 cut(s)	397
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	4 cut(s)	100, 209, 264, 292
NruI	TCGCGA	1 cut(s)	105
NspV	TTCGAA	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	128
RruI	TCGCGA	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	397
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	4 cut(s)	100, 209, 264, 292
Sau96I	GGNCC	1 cut(s)	128
SetI	ASST	5 cut(s)	24, 73, 79, 118, 396
SfaNI	GCATC	1 cut(s)	325
SfuI	TTCGAA	1 cut(s)	242
SnaBI	TACGTA	1 cut(s)	71
Sse9I	AATT	3 cut(s)	91, 244, 297
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	2 cut(s)	73, 118
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	91, 244, 297
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TseI	GCWGC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.