Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01050

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

24081 .. 24693

Gene Structure 613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCGAGACAGTATGGTGAATGGACTGAAGAAGAAGACTCGATCCTGAGAGCAGCAATTGGAGAGCATGGACATTGCTGGTCAAAAGTTTCTGCCTGTGTACCTCAGCGGACTGATAATATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCAGAGGAAGTGCTGGTGCTCAGAGAAGAGAGGAGAATACGTAAAGTTGCTCTTATCTGCAATTTTGTTGATTGCGAGAAAGAACGTCCAGCTCTTGGCCCTAATGATTTTCTTGAACCAGAGGATAATTCAACAAAAACTTTAACTTTTCCTAGGAAGACTGGGAATATAAAAAGAGGATCACAATCTGGAAAGACAAACAATATCTCTTCGAATTGTCAAGTTATGAAGAAGATTAGATCCAAGAGGCGTAAAAACTATGATAAAATTTGTTCTAATGAGGCTGACATATGTAATGGGGATGATGCCTCAGATTGGGATGATACTATTGCTTGCTTTGCACATAAAGTAAAGAAGAGACAGCAACTTATTGCTGATTTTTCTGTCCAAGCAAGTTGCCCCTTGCATCTTGAGAATCAAAGAGTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

193

Amino Acids

22.3

Weight (kDa)

8.67

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	6 - 47	6.5e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 51	5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	3 cut(s)	37, 337, 384
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	245, 465
AgsI	TTSAA	2 cut(s)	266, 282
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	3 cut(s)	37, 337, 384
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	417
AspA2I	CCTAGG	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	362
AvrII	CCTAGG	1 cut(s)	302
BbsI	GAAGAC	2 cut(s)	42, 314
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	2 cut(s)	303, 580
BisI	GCNGC	1 cut(s)	54
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	445, 565
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	2 cut(s)	42, 314
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 465
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	457, 475
BseJI	GATNNNNATC	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	245, 465
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	4 cut(s)	38, 119, 184, 474
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	2 cut(s)	145, 196
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	245, 465
BsmAI	GTCTC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	42, 329, 389
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	4 cut(s)	39, 118, 183, 473
BspPI	GGATC	3 cut(s)	37, 337, 384
BspT104I	TTCGAA	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	42, 329, 389
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	3 cut(s)	171, 364, 500
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	4 cut(s)	47, 105, 170, 460
BstF5I	GGATG	2 cut(s)	457, 475
BstKTI	GATC	3 cut(s)	45, 332, 392
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	3 cut(s)	42, 329, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstSNI	TACGTA	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	2 cut(s)	42, 314
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	457, 475
Cac8I	GCNNGC	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	3 cut(s)	242, 249, 434
CviKI_1	RGCY	3 cut(s)	242, 249, 434
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	4 cut(s)	47, 105, 170, 460
DpnI	GATC	3 cut(s)	44, 331, 391
DpnII	GATC	3 cut(s)	42, 329, 389
Eam1104I	CTCTTC	3 cut(s)	171, 364, 500
EarI	CTCTTC	3 cut(s)	171, 364, 500
Eco105I	TACGTA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	1 cut(s)	71
FaiI	YATR	9 cut(s)	15, 69, 122, 320, 377, 411, 440, 442, 495
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	440
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	464, 482
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	303, 580
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	3 cut(s)	38, 565, 573
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	173, 463
Hpy188III	TCNNGA	6 cut(s)	6, 46, 152, 263, 339, 560
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	2 cut(s)	190, 235
HpyCH4V	TGCA	3 cut(s)	210, 491, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	4 cut(s)	47, 105, 170, 460
HpySE526I	ACGT	2 cut(s)	190, 235
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	42, 329, 389
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	2 cut(s)	445, 565
MaeI	CTAG	2 cut(s)	303, 580
MaeII	ACGT	2 cut(s)	190, 235
MalI	GATC	3 cut(s)	44, 331, 391
MboI	GATC	3 cut(s)	42, 329, 389
MboII	GAAGA	9 cut(s)	41, 44, 47, 188, 319, 351, 391, 394, 517
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	5 cut(s)	57, 211, 277, 364, 417
MlyI	GAGTC	2 cut(s)	32, 582
MnlI	CCTC	9 cut(s)	114, 123, 148, 174, 265, 320, 390, 424, 469
MseI	TTAA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeI	CATATG	1 cut(s)	440
NdeII	GATC	3 cut(s)	42, 329, 389
NlaIII	CATG	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	565
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	32, 581
PpsI	GAGTC	2 cut(s)	32, 581
Ppu21I	YACGTR	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	42, 329, 389
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	32, 582
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	106, 144, 193, 238, 244
SfaNI	GCATC	2 cut(s)	445, 565
SfuI	TTCGAA	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SnaBI	TACGTA	1 cut(s)	191
Sse9I	AATT	5 cut(s)	57, 211, 277, 364, 417
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	303, 580
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	2 cut(s)	193, 238
TaqI	TCGA	3 cut(s)	5, 41, 362
TasI	AATT	5 cut(s)	57, 211, 277, 364, 417
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	392
Van91I	CCANNNNNTGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	417
XmaJI	CCTAGG	1 cut(s)	302
XspI	CTAG	2 cut(s)	303, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.