Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

55837296 .. 55837868

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0419500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCATTCCGAAAGCGATCCAAGTCGAGGCAAGAGCAGAAAGCTGATGAGGGTAATGGTTTTGATGAGGGCTCAAGTACATCAGACTCGGATAGTAGTGATAATGTCTCGGAAAGTCTTTCTGATATTGACGATGCCGAGATTTCTCCATACCTACTAACCAAGAAGGAGGCACTGTATAAAACCATCATCTGGGAAGCAATGCACAAGGATTATGTCGAGAAAAGAAGTACTAGAAAAAGAGCCAGAAAAGCCAAGGAAGCTGGTCCTCGGAGAAAGGCAGCCAAAACTTCTACCAAGAAATCGGATGAAGGGCATAGTAATCTTGCACCGGAAGTCAAAAAAGGACGGAGTTCGAAAATCAACTATAATGCCATAAATGAAGAGGATTGCAGGTTGGAAGAAGGTTTGGAGTCTAACGAGAAAGTCATCGGTGCAGAGGCTCAAGACGGACAAGGCTATTATGATGATAATTATGAGTCTGAGCATGAAAACCAGTACAATGAAGAGGACGAGTCTTATTATGCAAATGATGATGGTGATGATAACGGGCACAATGATGGATGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

190

Amino Acids

21.57

Weight (kDa)

4.81

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRF1	PF07741	41 - 127	4.4e-12	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	192
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	79, 232, 500
AfiI	CCNNNNNNNGG	2 cut(s)	27, 192
AluBI	AGCT	2 cut(s)	44, 263
AluI	AGCT	2 cut(s)	44, 263
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	551
AsuII	TTCGAA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	194, 530, 554, 558
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	58, 429
BsaJI	CCNNGG	2 cut(s)	255, 269
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 192
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	255, 269
BseGI	GGATG	2 cut(s)	313, 569
BseLI	CCNNNNNNNGG	2 cut(s)	27, 192
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	496
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	27, 192
BsmAI	GTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	74, 555
Bsp143I	GATC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	255, 269
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	378, 501
BstBI	TTCGAA	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	313, 569
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 260
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	313, 569
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	78, 231, 499
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	8 cut(s)	44, 72, 245, 254, 263, 284, 443, 459
CviKI_1	RGCY	8 cut(s)	44, 72, 245, 254, 263, 284, 443, 459
CviQI	GTAC	3 cut(s)	78, 231, 499
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	378, 501
EarI	CTCTTC	2 cut(s)	378, 501
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	491
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	282
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	1 cut(s)	491
HinfI	GANTC	4 cut(s)	86, 413, 479, 515
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	551
Hpy188I	TCNGA	9 cut(s)	11, 85, 91, 112, 124, 273, 307, 484, 572
Hpy188III	TCNNGA	2 cut(s)	220, 446
HpyAV	CCTTC	3 cut(s)	160, 305, 398
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	205, 329, 393, 437, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 260
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	178, 249, 259, 345, 379, 509
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	234
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	395, 413, 518
MhlI	GDGCHC	2 cut(s)	74, 555
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	4 cut(s)	80, 422, 488, 524
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	21, 43, 61, 163, 279, 379, 433, 502
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	251, 260
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	491
NmeAIII	GCCGAG	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	356
PctI	GAATGC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	4 cut(s)	80, 421, 487, 523
PpsI	GAGTC	4 cut(s)	80, 421, 487, 523
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	3 cut(s)	79, 232, 500
RsaNI	GTAC	3 cut(s)	78, 231, 499
RseI	CAYNNNNRTG	1 cut(s)	558
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	4 cut(s)	80, 422, 488, 524
SduI	GDGCHC	2 cut(s)	74, 555
SetI	ASST	5 cut(s)	46, 156, 265, 398, 409
SfaNI	GCATC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	73, 444
SmoI	CTYRAG	2 cut(s)	73, 444
Sse9I	AATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	26, 219, 356
TasI	AATT	1 cut(s)	472
TatI	WGTACW	3 cut(s)	77, 230, 498
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	324, 396, 504, 519
TspGWI	ACGGA	2 cut(s)	364, 465
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	266
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.