Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

53649113 .. 53650297

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTGACCAAATTTCCGGACCGAAAAAACTGGTCAAAGGTAGAAAAGGAAAATCTTCTGAAGGGAATAAGACAACAGTTTCAGGAAATGGTGCTTCAATATCATGGAGGAAACTCAAATGTCAACGACATTGATGACGTTTTGGCTTCAATCAAAGATTTGGCTTCCATGTATGTTCCTGGTCGTTCCGGTGAAGAACGTGAAGCAAGGTGGTTGAACTGGGAGGATCCCTTAATCAACCATGAACCATGGACTGTAGATGAGGACAAAAGAATTCTGGAGCTTGTTCAGAAGCAGGGGGTCAATGATTGGATTGATATAGCACCTGCATCACTAGTTCTAAAAGGGATTAACAGGACTCCATTTCAGTGCTTGGCACGCAATCAAAGGAGTCTAAATGCTTTCATACTGAAAGGTGAATGGAGCAAGGAAGAGGATGCGAAACTCAACTCTGCTGTAGAAGTGTTTGGTGAGGGTGATTGGCTGTCCGTGGCTTCTGCTTTAGGAGGAAGAACTGGTACGCAAAGCTCTAATAGATGGAAAAAAGCAATTCATCCAACCAGGACAAGAAAAGGTAAGTGGACTTTAGAGGAAGACACATGCCTGATTGTGGCTCATATTCTTTTCGGGGGGACTAAAAATTGGAATAAAATAGCTCAGTTTGTGCGGGGGCAAACTCAGGTACAATGTCGAGATAGGTTTGTCAACTCTTTAGAACGTTCTTTGAAGTTCGGTGAATGGACTGAAGAAGAAGACTCGATCCTGAGAGCAGCAATTGGAGAGCATGGACATTGCTGGTCAAAAGTTTCTGTCTGTGTACCTCAGCGGACTGATAATATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCAGAAGAAGTGCTGTTGCTCAGAGAAGAGAGGAGAATACGTAAAGCTGCTCTTATCCGCAATTTTGCTGATCGCGAGAAAGAACGTCCAGCTCTTGGCCCTAATGATTTTCTTGTAGCAGAGGCTACTTCAACAAAAACTTCTACTTTTCCTAGGAAGACTGGGAATATAAAAAAAGGATCACAATCTGGAAAGAAAAACAATATCTCTTCGAATTGTCAAGTTATAAAGAAGATTAGACCCAAGAGGCGTAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

375

Amino Acids

43.16

Weight (kDa)

9.62

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	82 - 125	2.6e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	84 - 149	1.5e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	138 - 182	4.3e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	141 - 199	3.2e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	191 - 236	9.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	194 - 252	2.2e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	245 - 286	5.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	247 - 290	5.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1094
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	962
AccII	CGCG	1 cut(s)	942
AccIII	TCCGGA	1 cut(s)	16
AciI	CCGC	3 cut(s)	667, 826, 925
AclI	AACGTT	1 cut(s)	718
AclWI	GGATC	4 cut(s)	221, 234, 754, 1054
AcsI	RAATTY	2 cut(s)	11, 273
AcuI	CTGAAG	2 cut(s)	80, 765
AfaI	GTAC	3 cut(s)	520, 684, 819
AfiI	CCNNNNNNNGG	2 cut(s)	610, 962
AgsI	TTSAA	5 cut(s)	98, 150, 217, 727, 999
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	178, 560
AluBI	AGCT	5 cut(s)	283, 528, 656, 914, 959
AluI	AGCT	5 cut(s)	283, 528, 656, 914, 959
AlwI	GGATC	4 cut(s)	221, 234, 754, 1054
Aor13HI	TCCGGA	1 cut(s)	16
AoxI	GGCC	1 cut(s)	964
ApeKI	GCWGC	2 cut(s)	770, 914
ApoI	RAATTY	2 cut(s)	11, 273
Asp700I	GAANNNNTTC	1 cut(s)	54
AspA2I	CCTAGG	1 cut(s)	1019
AspS9I	GGNCC	2 cut(s)	19, 965
AsuHPI	GGTGA	5 cut(s)	203, 428, 482, 488, 746
AsuII	TTCGAA	1 cut(s)	1079
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	1019
BamHI	GGATCC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	2 cut(s)	502, 534
BbsI	GAAGAC	3 cut(s)	600, 759, 1031
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	2 cut(s)	782, 901
BccI	CCATC	2 cut(s)	531, 846
BciT130I	CCWGG	2 cut(s)	180, 562
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	3 cut(s)	335, 1020, 1126
BfmI	CTRYAG	2 cut(s)	255, 456
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	2 cut(s)	771, 915
BlnI	CCTAGG	1 cut(s)	1019
BlsI	GCNGC	2 cut(s)	772, 916
Bme1390I	CCNGG	2 cut(s)	180, 562
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 965
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	180, 562
BmrI	ACTGGG	2 cut(s)	229, 1038
BmsI	GCATC	2 cut(s)	338, 427
BmuI	ACTGGG	2 cut(s)	229, 1038
BpiI	GAAGAC	3 cut(s)	600, 759, 1031
BpmI	CTGGAG	2 cut(s)	299, 865
Bpu10I	CCTNAGC	1 cut(s)	822
Bpu14I	TTCGAA	1 cut(s)	1079
BsaAI	YACGTR	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	1051
BsaJI	CCNNGG	3 cut(s)	248, 489, 1019
BsaWI	WCCGGW	2 cut(s)	16, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	2 cut(s)	610, 962
Bse1I	ACTGG	4 cut(s)	35, 224, 520, 1033
Bse3DI	GCAATG	1 cut(s)	790
Bse8I	GATNNNNATC	1 cut(s)	1051
BseAI	TCCGGA	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	180, 562
BseDI	CCNNGG	3 cut(s)	248, 489, 1019
BseGI	GGATG	2 cut(s)	442, 553
BseJI	GATNNNNATC	1 cut(s)	1051
BseLI	CCNNNNNNNGG	2 cut(s)	610, 962
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	5 cut(s)	671, 692, 755, 836, 901
BseNI	ACTGG	4 cut(s)	35, 224, 520, 1033
BseRI	GAGGAG	2 cut(s)	862, 913
BseXI	GCAGC	2 cut(s)	782, 901
Bsh1236I	CGCG	1 cut(s)	942
BshFI	GGCC	1 cut(s)	966
BsiSI	CCGG	2 cut(s)	17, 189
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	610, 962
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	966
Bsp119I	TTCGAA	1 cut(s)	1079
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	226, 759, 937, 1046
Bsp19I	CCATGG	1 cut(s)	248
Bsp68I	TCGCGA	1 cut(s)	942
BspACI	CCGC	3 cut(s)	667, 826, 925
BspANI	GGCC	1 cut(s)	966
BspCNI	CTCAG	5 cut(s)	670, 691, 756, 835, 900
BspEI	TCCGGA	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	942
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	4 cut(s)	221, 234, 754, 1054
BspT104I	TTCGAA	1 cut(s)	1079
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	4 cut(s)	35, 224, 520, 1033
BssECI	CCNNGG	3 cut(s)	248, 489, 1019
BssMI	GATC	4 cut(s)	226, 759, 937, 1046
BssT1I	CCWWGG	2 cut(s)	248, 1019
Bst2UI	CCWGG	2 cut(s)	180, 562
Bst4CI	ACNGT	2 cut(s)	78, 256
Bst6I	CTCTTC	3 cut(s)	426, 888, 1081
BstBAI	YACGTR	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	1079
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	5 cut(s)	657, 678, 764, 822, 887
BstDSI	CCRYGG	2 cut(s)	248, 489
BstF5I	GGATG	2 cut(s)	442, 553
BstFNI	CGCG	1 cut(s)	942
BstKTI	GATC	4 cut(s)	229, 762, 940, 1049
BstMBI	GATC	4 cut(s)	226, 759, 937, 1046
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	2 cut(s)	180, 562
BstNSI	RCATGY	1 cut(s)	603
BstSCI	CCNGG	2 cut(s)	178, 560
BstSFI	CTRYAG	2 cut(s)	255, 456
BstSNI	TACGTA	1 cut(s)	908
BstUI	CGCG	1 cut(s)	942
BstV1I	GCAGC	2 cut(s)	782, 901
BstV2I	GAAGAC	3 cut(s)	600, 759, 1031
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	966
BtgI	CCRYGG	2 cut(s)	248, 489
BtsCI	GGATG	2 cut(s)	442, 553
BtsIMutI	CAGTG	1 cut(s)	374
BtuMI	TCGCGA	1 cut(s)	942
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	19, 965
CpoI	CGGWCCG	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	519, 683, 818
CspI	CGGWCCG	1 cut(s)	19
CviAII	CATG	6 cut(s)	104, 169, 242, 249, 600, 785
CviQI	GTAC	3 cut(s)	519, 683, 818
DdeI	CTNAG	5 cut(s)	657, 678, 764, 822, 887
DpnI	GATC	4 cut(s)	228, 761, 939, 1048
DpnII	GATC	4 cut(s)	226, 759, 937, 1046
Eam1104I	CTCTTC	3 cut(s)	426, 888, 1081
EarI	CTCTTC	3 cut(s)	426, 888, 1081
Eco105I	TACGTA	1 cut(s)	908
Eco130I	CCWWGG	2 cut(s)	248, 1019
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	80, 765
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	178, 560
EcoT14I	CCWWGG	2 cut(s)	248, 1019
ErhI	CCWWGG	2 cut(s)	248, 1019
FaeI	CATG	6 cut(s)	107, 172, 245, 252, 603, 788
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	6 cut(s)	103, 168, 241, 248, 599, 784
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	771, 915
FokI	GGATG	2 cut(s)	449, 540
Fsp4HI	GCNGC	2 cut(s)	771, 915
FspBI	CTAG	3 cut(s)	335, 1020, 1126
GluI	GCNGC	2 cut(s)	771, 915
GsuI	CTGGAG	2 cut(s)	299, 865
HaeIII	GGCC	1 cut(s)	966
HapII	CCGG	2 cut(s)	17, 189
Hin1II	CATG	6 cut(s)	107, 172, 245, 252, 603, 788
HincII	GTYRAC	3 cut(s)	6, 124, 706
HindII	GTYRAC	3 cut(s)	6, 124, 706
HinfI	GANTC	3 cut(s)	358, 391, 755
HpaII	CCGG	2 cut(s)	17, 189
HphI	GGTGA	5 cut(s)	203, 428, 482, 488, 746
Hpy166II	GTNNAC	5 cut(s)	6, 124, 582, 706, 818
Hpy188I	TCNGA	3 cut(s)	60, 291, 890
Hpy188III	TCNNGA	8 cut(s)	17, 83, 278, 692, 763, 869, 941, 1056
Hpy8I	GTNNAC	5 cut(s)	6, 124, 582, 706, 818
HpyAV	CCTTC	2 cut(s)	55, 850
HpyCH4III	ACNGT	2 cut(s)	78, 256
HpyCH4IV	ACGT	5 cut(s)	138, 199, 718, 907, 952
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	5 cut(s)	657, 678, 764, 822, 887
HpySE526I	ACGT	5 cut(s)	138, 199, 718, 907, 952
Hsp92II	CATG	6 cut(s)	107, 172, 245, 252, 603, 788
Kpn2I	TCCGGA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	226, 759, 937, 1046
LmnI	GCTCC	2 cut(s)	280, 423
Lsp1109I	GCAGC	2 cut(s)	782, 901
LweI	GCATC	2 cut(s)	338, 427
MaeI	CTAG	3 cut(s)	335, 1020, 1126
MaeII	ACGT	5 cut(s)	138, 199, 718, 907, 952
MalI	GATC	4 cut(s)	228, 761, 939, 1048
MboI	GATC	4 cut(s)	226, 759, 937, 1046
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	7 cut(s)	11, 273, 549, 640, 774, 928, 1081
MlyI	GAGTC	3 cut(s)	352, 400, 749
MmeI	TCCRAC	1 cut(s)	581
MroI	TCCGGA	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	233, 351
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	2 cut(s)	17, 189
MspR9I	CCNGG	2 cut(s)	180, 562
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	180, 562
MvnI	CGCG	1 cut(s)	942
MwoI	GCNNNNNNNGC	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	4 cut(s)	226, 759, 937, 1046
NlaIII	CATG	6 cut(s)	107, 172, 245, 252, 603, 788
NlaIV	GGNNCC	1 cut(s)	228
NruI	TCGCGA	1 cut(s)	942
NspI	RCATGY	1 cut(s)	603
NspV	TTCGAA	1 cut(s)	1079
PaqCI	CACCTGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	962
PkrI	GCNGC	2 cut(s)	772, 916
PleI	GAGTC	3 cut(s)	352, 399, 749
PpsI	GAGTC	3 cut(s)	352, 399, 749
Ppu21I	YACGTR	1 cut(s)	908
PsiI	TTATAA	1 cut(s)	1094
Psp1406I	AACGTT	1 cut(s)	718
Psp6I	CCWGG	2 cut(s)	178, 560
PspGI	CCWGG	2 cut(s)	178, 560
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	19, 965
PsuI	RGATCY	1 cut(s)	226
RruI	TCGCGA	1 cut(s)	942
RsaI	GTAC	3 cut(s)	520, 684, 819
RsaNI	GTAC	3 cut(s)	519, 683, 818
RseI	CAYNNNNRTG	1 cut(s)	367
Rsr2I	CGGWCCG	1 cut(s)	19
RsrII	CGGWCCG	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	233, 351
SatI	GCNGC	2 cut(s)	771, 915
Sau3AI	GATC	4 cut(s)	226, 759, 937, 1046
Sau96I	GGNCC	2 cut(s)	19, 965
SchI	GAGTC	3 cut(s)	352, 400, 749
ScrFI	CCNGG	2 cut(s)	180, 562
SfaNI	GCATC	2 cut(s)	338, 427
SfcI	CTRYAG	2 cut(s)	255, 456
SfuI	TTCGAA	1 cut(s)	1079
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	367
SnaBI	TACGTA	1 cut(s)	908
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	7 cut(s)	11, 273, 549, 640, 774, 928, 1081
SsiI	CCGC	3 cut(s)	667, 826, 925
SspMI	CTAG	3 cut(s)	335, 1020, 1126
StyD4I	CCNGG	2 cut(s)	178, 560
StyI	CCWWGG	2 cut(s)	248, 1019
TaaI	ACNGT	2 cut(s)	78, 256
TaiI	ACGT	5 cut(s)	141, 202, 721, 910, 955
TaqI	TCGA	3 cut(s)	691, 758, 1079
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	7 cut(s)	11, 273, 549, 640, 774, 928, 1081
Tru1I	TTAA	2 cut(s)	233, 351
Tru9I	TTAA	2 cut(s)	233, 351
TscAI	CASTG	1 cut(s)	374
TseI	GCWGC	2 cut(s)	770, 914
TspDTI	ATGAA	3 cut(s)	258, 394, 542
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	962
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	11, 273
XceI	RCATGY	1 cut(s)	603
XmaJI	CCTAGG	1 cut(s)	1019
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	3 cut(s)	335, 1020, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.