Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

56908727 .. 56912817

Gene Structure 4091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG406800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGCAAGGAAGAGGATGCGAAACTCAGCTCCGAGTAGAAGTGTTTGGTGAGGGTGATTGGCAGTCCGTGGCTTCTGCTTTGGGAGGAAAAACTGGTACGCAATGCTCTAATAGATGGAAAAAAGCAATTCATCCAACCAGGACAAGAAAAGGTAAGTGGTCTTTAGAGGAAGACACATGCCTGACCGTGGCTCATATTCTTTTCGGGGGGACTAAAAATTGGAATAAAATAGCTCAGTTGGTGCGGAGGCAAACTCAGGTACAATGTCGAGACAGGTTTGTCAACTCTTTAGAACCTTCTTTGAAGTTCGGTGAATGGACTGAAGAAGAAGACTCGATCCTGAGAGCAGCAATTGGAGAGCATGGACATTGCTGGTCAAAAGTTTCTGCCTGTGTGCCTCAGCGGACTGATAATATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCAGAGGAAGTGCTGGTGCTCAGAGAAGAGAGGAGAATACGTAAAGTTGCTCTTATCTGCAATTTTGTTGATTGCGAGAAAGAACGTCCAGCTCTTGGCCCTAATGATTTTCTTGAACCAGAGGATAATTCAACAAAAACTTTAACTTTTCCTAGGAAGACTGGGAATATAAAAAGAGGATCACAATCTGGAAAGACAAACAATATCTCTTCGAATTGGCAAGTTATGAAGAAGATTAGATCCAAGAGGCGTAAAAACTATGATAAAATTTGTTCTAATGAGGCTGACATATGTAATGGGGATGATGCCTCAGATTGGGATGATACTATTGCTTGCTTTGCACATAAAGTAAAGAAGAAGAGAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

272

Amino Acids

31.3

Weight (kDa)

9.33

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 42	1.3e-06	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 59	9.8e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	51 - 96	2.6e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	54 - 112	6.3e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	105 - 146	8.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	107 - 150	8.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	2 cut(s)	247, 406
AclWI	GGATC	3 cut(s)	334, 634, 681
AcsI	RAATTY	1 cut(s)	714
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	100, 264
AfiI	CCNNNNNNNGG	3 cut(s)	190, 542, 762
AgsI	TTSAA	3 cut(s)	307, 563, 579
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	4 cut(s)	31, 236, 539, 814
AluI	AGCT	4 cut(s)	31, 236, 539, 814
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	334, 634, 681
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	714
AspA2I	CCTAGG	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	3 cut(s)	62, 68, 326
AsuII	TTCGAA	1 cut(s)	659
AvrII	CCTAGG	1 cut(s)	599
BbsI	GAAGAC	3 cut(s)	180, 339, 611
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	111, 426
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	600
BisI	GCNGC	1 cut(s)	351
BlnI	CCTAGG	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	545
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	8, 742
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	3 cut(s)	180, 339, 611
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BpmI	CTGGAG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	69, 189, 599
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 542, 762
Bse1I	ACTGG	2 cut(s)	100, 613
Bse3DI	GCAATG	2 cut(s)	110, 370
Bse8I	GATNNNNATC	1 cut(s)	631
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	3 cut(s)	69, 189, 599
BseGI	GGATG	4 cut(s)	23, 133, 754, 772
BseJI	GATNNNNATC	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	190, 542, 762
BseMI	GCAATG	2 cut(s)	110, 370
BseMII	CTCAG	7 cut(s)	41, 251, 272, 335, 416, 481, 771
BseNI	ACTGG	2 cut(s)	100, 613
BseRI	GAGGAG	2 cut(s)	442, 493
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	190, 542, 762
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	339, 626, 686
BspACI	CCGC	2 cut(s)	247, 406
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	7 cut(s)	40, 250, 271, 336, 415, 480, 770
BspPI	GGATC	3 cut(s)	334, 634, 681
BspT104I	TTCGAA	1 cut(s)	659
BsrDI	GCAATG	2 cut(s)	110, 370
BsrI	ACTGG	2 cut(s)	100, 613
BssECI	CCNNGG	3 cut(s)	69, 189, 599
BssMI	GATC	3 cut(s)	339, 626, 686
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	4 cut(s)	7, 468, 661, 800
BstBAI	YACGTR	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	781
BstDEI	CTNAG	7 cut(s)	27, 237, 258, 344, 402, 467, 757
BstDSI	CCRYGG	2 cut(s)	69, 189
BstF5I	GGATG	4 cut(s)	23, 133, 754, 772
BstKTI	GATC	3 cut(s)	342, 629, 689
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	3 cut(s)	339, 626, 686
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	140
BstSNI	TACGTA	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	3 cut(s)	180, 339, 611
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	2 cut(s)	69, 189
BtsCI	GGATG	4 cut(s)	23, 133, 754, 772
Cac8I	GCNNGC	1 cut(s)	781
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	99, 263
CviAII	CATG	2 cut(s)	180, 365
CviJI	RGCY	8 cut(s)	31, 74, 194, 236, 539, 546, 731, 814
CviKI_1	RGCY	8 cut(s)	31, 74, 194, 236, 539, 546, 731, 814
CviQI	GTAC	2 cut(s)	99, 263
DdeI	CTNAG	7 cut(s)	27, 237, 258, 344, 402, 467, 757
DpnI	GATC	3 cut(s)	341, 628, 688
DpnII	GATC	3 cut(s)	339, 626, 686
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	4 cut(s)	7, 468, 661, 800
EarI	CTCTTC	4 cut(s)	7, 468, 661, 800
Eco105I	TACGTA	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	2 cut(s)	183, 368
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	179, 364
FauNDI	CATATG	1 cut(s)	737
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	4 cut(s)	30, 120, 761, 779
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	546
Hin1II	CATG	2 cut(s)	183, 368
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	1 cut(s)	335
HphI	GGTGA	3 cut(s)	62, 68, 326
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	35, 470, 760
Hpy188III	TCNNGA	5 cut(s)	272, 343, 449, 560, 636
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	309, 430
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	487, 532
HpyCH4V	TGCA	2 cut(s)	507, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	7 cut(s)	27, 237, 258, 344, 402, 467, 757
HpySE526I	ACGT	2 cut(s)	487, 532
Hsp92II	CATG	2 cut(s)	183, 368
Kzo9I	GATC	3 cut(s)	339, 626, 686
LmnI	GCTCC	2 cut(s)	4, 36
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	2 cut(s)	8, 742
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	487, 532
MalI	GATC	3 cut(s)	341, 628, 688
MboI	GATC	3 cut(s)	339, 626, 686
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	7 cut(s)	129, 220, 354, 508, 574, 661, 714
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	161
MseI	TTAA	2 cut(s)	590, 817
MspA1I	CMGCKG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	785
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	3 cut(s)	339, 626, 686
NlaIII	CATG	2 cut(s)	183, 368
NspI	RCATGY	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	659
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	686
RsaI	GTAC	2 cut(s)	100, 264
RsaNI	GTAC	2 cut(s)	99, 263
SaqAI	TTAA	2 cut(s)	590, 817
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	339, 626, 686
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	2 cut(s)	8, 742
SfuI	TTCGAA	1 cut(s)	659
SnaBI	TACGTA	1 cut(s)	488
Sse9I	AATT	7 cut(s)	129, 220, 354, 508, 574, 661, 714
SsiI	CCGC	2 cut(s)	247, 406
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	490, 535
TaqI	TCGA	3 cut(s)	271, 338, 659
TasI	AATT	7 cut(s)	129, 220, 354, 508, 574, 661, 714
Tru1I	TTAA	2 cut(s)	590, 817
Tru9I	TTAA	2 cut(s)	590, 817
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	122, 689
TspGWI	ACGGA	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	1 cut(s)	714
XceI	RCATGY	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	599
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.