Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002490

Physical Location & Seq

Genomic Coordinates Forward (+)

54577331 .. 54578242

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG409000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTGCTTCAATATCATGGAGGAAACTCAAATGTCGATGACATTGATCATATTTTGGCTTCAATCAAAGATGTTGAGATTACTTCTCATAGCATTAGAGAGTTCCTGCCTAAGGTTAACTGGCAGCAGTTGGCTTCCATGTATGTTCCTGGTCGTTCCGGTGAAGAATATGAAGCAAGGTGGTTGAACTGGGAGGATCCCTTAATCAACCATGAACCATGGACCGTAGATGAGGACAAGAGAATTCTGGAGCTTGTTCAGAAGCAGGGGGTCAATGATTGGATTGATATAGCACCTGCATCACTATTTCTAAAAGGGATTAACAGGACTCCATTTCAGTGCTTGGCACGCTATCAAAGGAGTCTAAATGCTTTCATACTGAAAGGTGAATGGAGCAAGGAAGAGGATGCGAAACTCAGCTCTGCTGTAGAAGTGTTTGGTGAGGGTGATTGGCAGTCTGTGGCTTCTGCTTTGGGAGGAAGAACTGGTACGCAATGCTCTAATAGATGGAAAAAAGCAATTCATCCAACCAGGACAAGAAAAGGTAAGTGGACTTTAGAGGAAGACACATGCCTGACCGTGGCTCATATTCTTTTCGGGGGGACTAAAAATTGGAATAAAATAGCTCAGTTTGTGCGGGGGCGAACTCAGGTACAATGTCGAGATAGGTTTGTCAACTCTTTAGAACCTTCTTTGAAGTTTGGTGAATGGACTGAAGAAGAAGACTCGATCCTGAGAGCAGCAATTGGAGAGCATGGACATTGCTGGTCAAAAGTTTCTGCCTGTGTACCTCAGCGGACTGATAATATGTGCTGGAGGAGATGGAAGGTGTTGTTTCCAGAGGAAGTGCTGGTGCTCAGAGAAGAGAGGAGAATAAGTAAAGCTGCTCTTATCTGCAATTTTGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.93

Weight (kDa)

6.47

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	72 - 120	5.9e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 139	3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	128 - 172	4.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	131 - 189	9.7e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	181 - 226	2.5e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	184 - 242	1.2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	235 - 276	9.7e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	237 - 280	9.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18100 AT3G18100 AT3G18100 AT3G18100
fragaria_vesca	FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070 FvH4_5g17070
malus_domestica	MD14G1233900.v1.1
prunus_persica	Prupe.5G230100_v2.0.a1 Prupe.5G230100_v2.0.a1
pyrus_communis	pycom14g19490
rosa_chinensis	RchiOBHm_Chr7g0178781 RchiOBHm_Chr7g0230201
rosa_laevigata	RLG00000005416
rosa_multiflora	Rmu_sc0001901.1_g000001 Rmu_sc0002822.1_g000027 Rmu_sc0004110.1_g000007 Rmu_sc0004110.1_g000008 Rmu_sc0015029.1_g000002 Rmu_sc0025325.1_g000009
rosa_roxburghii	Rroxscaffold_3G00230300 Rroxscaffold_3G00274620
rosa_rugosa	Rorug06G0419400 Rorug06G0419500 Rorug06G0419600
rosa_samantha	Rh7AG018900 Rh7AG408900 Rh7AG409000 Rh7BG018200 Rh7BG388800 Rh7CG019000 Rh7DG018800 Rh7DG406800
rosa_wichuraiana	Rw0G022580 Rw0G022590 Rw7G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	304
AciI	CCGC	2 cut(s)	637, 796
AclWI	GGATC	3 cut(s)	191, 204, 724
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	3 cut(s)	490, 654, 789
AfiI	CCNNNNNNNGG	2 cut(s)	112, 580
AgsI	TTSAA	4 cut(s)	11, 63, 187, 697
AjnI	CCWGG	2 cut(s)	148, 530
AluBI	AGCT	4 cut(s)	253, 420, 626, 884
AluI	AGCT	4 cut(s)	253, 420, 626, 884
Alw21I	GWGCWC	1 cut(s)	858
AlwI	GGATC	3 cut(s)	191, 204, 724
ApeKI	GCWGC	3 cut(s)	124, 740, 884
ApoI	RAATTY	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	5 cut(s)	173, 398, 452, 458, 716
AvaII	GGWCC	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	196
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BbsI	GAAGAC	2 cut(s)	570, 729
Bbv12I	GWGCWC	1 cut(s)	858
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	3 cut(s)	136, 752, 871
BccI	CCATC	2 cut(s)	501, 816
BciT130I	CCWGG	2 cut(s)	150, 532
BclI	TGATCA	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	3 cut(s)	125, 741, 885
BlsI	GCNGC	3 cut(s)	126, 742, 886
Bme1390I	CCNGG	2 cut(s)	150, 532
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	150, 532
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	308, 397
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	570, 729
BpmI	CTGGAG	2 cut(s)	269, 835
Bpu10I	CCTNAGC	1 cut(s)	792
BsaJI	CCNNGG	2 cut(s)	218, 579
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	862, 892
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 580
Bse1I	ACTGG	3 cut(s)	125, 194, 490
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	500, 760
BseBI	CCWGG	2 cut(s)	150, 532
BseDI	CCNNGG	2 cut(s)	218, 579
BseGI	GGATG	2 cut(s)	412, 523
BseLI	CCNNNNNNNGG	2 cut(s)	112, 580
BseMI	GCAATG	2 cut(s)	500, 760
BseMII	CTCAG	6 cut(s)	430, 641, 662, 725, 806, 871
BseNI	ACTGG	3 cut(s)	125, 194, 490
BseRI	GAGGAG	2 cut(s)	832, 883
BseXI	GCAGC	3 cut(s)	136, 752, 871
BsiHKAI	GWGCWC	1 cut(s)	858
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	112, 580
BsmFI	GGGAC	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	3 cut(s)	46, 196, 729
Bsp19I	CCATGG	1 cut(s)	218
BspACI	CCGC	2 cut(s)	637, 796
BspCNI	CTCAG	6 cut(s)	429, 640, 661, 726, 805, 870
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	191, 204, 724
BsrDI	GCAATG	2 cut(s)	500, 760
BsrI	ACTGG	3 cut(s)	125, 194, 490
BssECI	CCNNGG	2 cut(s)	218, 579
BssMI	GATC	3 cut(s)	46, 196, 729
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	150, 532
Bst4CI	ACNGT	2 cut(s)	226, 580
Bst6I	CTCTTC	2 cut(s)	396, 858
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	7 cut(s)	111, 416, 627, 648, 734, 792, 857
BstDSI	CCRYGG	2 cut(s)	218, 579
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	412, 523
BstKTI	GATC	3 cut(s)	49, 199, 732
BstMBI	GATC	3 cut(s)	46, 196, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	150, 532
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	148, 530
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	136, 752, 871
BstV2I	GAAGAC	2 cut(s)	570, 729
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	111
BtgI	CCRYGG	2 cut(s)	218, 579
BtsCI	GGATG	2 cut(s)	412, 523
BtsIMutI	CAGTG	1 cut(s)	344
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	489, 653, 788
CviAII	CATG	6 cut(s)	17, 139, 212, 219, 570, 755
CviJI	RGCY	8 cut(s)	59, 134, 253, 420, 464, 584, 626, 884
CviKI_1	RGCY	8 cut(s)	59, 134, 253, 420, 464, 584, 626, 884
CviQI	GTAC	3 cut(s)	489, 653, 788
DdeI	CTNAG	7 cut(s)	111, 416, 627, 648, 734, 792, 857
DpnI	GATC	3 cut(s)	48, 198, 731
DpnII	GATC	3 cut(s)	46, 196, 729
Eam1104I	CTCTTC	2 cut(s)	396, 858
EarI	CTCTTC	2 cut(s)	396, 858
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	735
Eco81I	CCTNAGG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	148, 530
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	6 cut(s)	20, 142, 215, 222, 573, 758
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	6 cut(s)	16, 138, 211, 218, 569, 754
FauI	CCCGC	1 cut(s)	630
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	125, 741, 885
FokI	GGATG	2 cut(s)	419, 510
Fsp4HI	GCNGC	3 cut(s)	125, 741, 885
GluI	GCNGC	3 cut(s)	125, 741, 885
GsuI	CTGGAG	2 cut(s)	269, 835
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	6 cut(s)	20, 142, 215, 222, 573, 758
HincII	GTYRAC	2 cut(s)	118, 676
HindII	GTYRAC	2 cut(s)	118, 676
HinfI	GANTC	3 cut(s)	328, 361, 725
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	5 cut(s)	173, 398, 452, 458, 716
Hpy166II	GTNNAC	4 cut(s)	118, 552, 676, 788
Hpy188I	TCNGA	2 cut(s)	261, 860
Hpy188III	TCNNGA	4 cut(s)	248, 662, 733, 839
Hpy8I	GTNNAC	4 cut(s)	118, 552, 676, 788
HpyAV	CCTTC	2 cut(s)	699, 820
HpyCH4III	ACNGT	2 cut(s)	226, 580
HpyCH4V	TGCA	2 cut(s)	299, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	7 cut(s)	111, 416, 627, 648, 734, 792, 857
Hsp92II	CATG	6 cut(s)	20, 142, 215, 222, 573, 758
Ksp22I	TGATCA	1 cut(s)	46
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	46, 196, 729
LmnI	GCTCC	2 cut(s)	250, 393
Lsp1109I	GCAGC	3 cut(s)	136, 752, 871
LweI	GCATC	2 cut(s)	308, 397
MalI	GATC	3 cut(s)	48, 198, 731
MboI	GATC	3 cut(s)	46, 196, 729
MboII	GAAGA	8 cut(s)	176, 413, 492, 575, 728, 731, 734, 875
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	5 cut(s)	243, 519, 610, 744, 898
MlyI	GAGTC	3 cut(s)	322, 370, 719
MmeI	TCCRAC	1 cut(s)	551
MseI	TTAA	4 cut(s)	117, 203, 321, 910
MslI	CAYNNNNRTG	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	150, 532
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	150, 532
MwoI	GCNNNNNNNGC	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	46, 196, 729
NlaIII	CATG	6 cut(s)	20, 142, 215, 222, 573, 758
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	573
PaqCI	CACCTGC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	126, 742, 886
PleI	GAGTC	3 cut(s)	322, 369, 719
PpsI	GAGTC	3 cut(s)	322, 369, 719
Psp6I	CCWGG	2 cut(s)	148, 530
PspGI	CCWGG	2 cut(s)	148, 530
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	3 cut(s)	490, 654, 789
RsaNI	GTAC	3 cut(s)	489, 653, 788
RseI	CAYNNNNRTG	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	117, 203, 321, 910
SatI	GCNGC	3 cut(s)	125, 741, 885
Sau3AI	GATC	3 cut(s)	46, 196, 729
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	3 cut(s)	322, 370, 719
ScrFI	CCNGG	2 cut(s)	150, 532
SduI	GDGCHC	1 cut(s)	858
SfaNI	GCATC	2 cut(s)	308, 397
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse9I	AATT	5 cut(s)	243, 519, 610, 744, 898
SsiI	CCGC	2 cut(s)	637, 796
StyD4I	CCNGG	2 cut(s)	148, 530
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	226, 580
TaqI	TCGA	3 cut(s)	36, 661, 728
TasI	AATT	5 cut(s)	243, 519, 610, 744, 898
Tru1I	TTAA	4 cut(s)	117, 203, 321, 910
Tru9I	TTAA	4 cut(s)	117, 203, 321, 910
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	3 cut(s)	124, 740, 884
TspDTI	ATGAA	4 cut(s)	186, 228, 364, 512
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	222
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	243
XceI	RCATGY	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.