Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

69038616 .. 69041893

Gene Structure 3278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG484600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACTAAATGTTGGTGGATCAAAATTCAAAAAGGGTGTGATCAGATGCTTGTCTTATTCATTGCAGAGAAATCGTTTCTCCCTAGGCGAGATATGGAATGGTTCTTCTTCTGTCCAAGGGATCGAAAGTACCCGAATGGCTCAAGAACAAATCGAGCTACCAAATCTGGCTACTGGAAAGCCACTGGAAAAGACCGCAAGGTTGTCTGCCAATCTAGTGTTACTGGATACCGCAAGACCCTTGTTTTCTATCGTGGCCGTGCTCCTTTAGGTGATCGAACGGAGTGGATTATGCATGAGTACCGCCTCAATGATGATTTTGCTCAGGGGTCACCAGGTCTCCAGGGAGTTTTTGCTTTGTGCCGTGTTGTTAAAAAGAAAGAGCATACACAGAAGGCAAATGATTCCAATGGAGAACCCAAGGCTAAGACGACTGGAAGTACTTCGAGCAATGGGGATTTGACCTCAACAAGAAACTCGAATGAGACCATGAGCATCTCTGCTGGAATGTCATCTCAAGTGAACTACCAGCATGACGAGAGTCGCCATTCAAGCCATACTACTTCTCCATATGAAGTCTCTCCAATGGCAGAGTTTGAGCCAGCTCCAAGAGGCACCAATCCTGCAGACTTCTGGATCTCACCTGACTTAATTCTTGATTCTTCAAAGGACTACCCACAGTTACAAGGAGCTGTGCCTAATTACTTCCCCCAGTACGAGTTTCCAAGCACAATGTCACCATGGCAGTCATATGAACACACTGAGATTTCGCCTAGTTCATCATACTCAAATTTTGGAGACTTCCAAATGGCAGATGATATGAATCAAATGCCCAGCATGTCACCTTTCTCAGGACACACAGACTACATGGGTTATTGTGGAAATGAGGGATTGCAATTTGAAGGTTTTGACCAGACTAGTACAGTGAGATATCCAAATCACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

315

Amino Acids

35.9

Weight (kDa)

6.71

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	30 - 103	7.5e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	3 cut(s)	196, 232, 304
AclWI	GGATC	3 cut(s)	26, 129, 644
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	24, 790
AfaI	GTAC	5 cut(s)	131, 302, 442, 716, 922
AfiI	CCNNNNNNNGG	1 cut(s)	851
AgsI	TTSAA	4 cut(s)	29, 552, 666, 902
AhlI	ACTAGT	1 cut(s)	917
AjnI	CCWGG	2 cut(s)	334, 342
AluBI	AGCT	3 cut(s)	158, 605, 692
AluI	AGCT	3 cut(s)	158, 605, 692
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	4 cut(s)	344, 479, 583, 792
AlwI	GGATC	3 cut(s)	26, 129, 644
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	24, 790
Asp700I	GAANNNNTTC	1 cut(s)	442
AspA2I	CCTAGG	1 cut(s)	83
AsuHPI	GGTGA	5 cut(s)	284, 324, 633, 729, 834
AvrII	CCTAGG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	243, 348
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	2 cut(s)	336, 344
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	4 cut(s)	344, 479, 583, 792
BcuI	ACTAGT	1 cut(s)	917
BfaI	CTAG	4 cut(s)	84, 216, 774, 918
BfmI	CTRYAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	221
BlnI	CCTAGG	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	336, 344
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	336, 344
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	2 cut(s)	36, 504
BmuI	ACTGGG	1 cut(s)	706
BoxI	GACNNNNGTC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	127, 501
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	2 cut(s)	344, 479
BsaJI	CCNNGG	5 cut(s)	83, 116, 343, 420, 740
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	5 cut(s)	179, 190, 229, 439, 712
Bse3DI	GCAATG	2 cut(s)	60, 457
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	336, 344
BseDI	CCNNGG	5 cut(s)	83, 116, 343, 420, 740
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMI	GCAATG	2 cut(s)	60, 457
BseMII	CTCAG	3 cut(s)	338, 753, 864
BseNI	ACTGG	5 cut(s)	179, 190, 229, 439, 712
BseYI	CCCAGC	1 cut(s)	833
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	4 cut(s)	344, 479, 583, 792
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	2 cut(s)	344, 479
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	5 cut(s)	18, 40, 121, 274, 636
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	3 cut(s)	196, 232, 304
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	337, 754, 863
BspLI	GGNNCC	1 cut(s)	616
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	3 cut(s)	26, 129, 644
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	2 cut(s)	344, 479
BsrDI	GCAATG	2 cut(s)	60, 457
BsrI	ACTGG	5 cut(s)	179, 190, 229, 439, 712
BssECI	CCNNGG	5 cut(s)	83, 116, 343, 420, 740
BssMI	GATC	5 cut(s)	18, 40, 121, 274, 636
BssT1I	CCWWGG	4 cut(s)	83, 116, 420, 740
Bst2UI	CCWGG	2 cut(s)	336, 344
Bst4CI	ACNGT	2 cut(s)	681, 925
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	4 cut(s)	324, 426, 762, 850
BstDSI	CCRYGG	1 cut(s)	740
BstEII	GGTNACC	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstKTI	GATC	5 cut(s)	21, 43, 124, 277, 639
BstMAI	GTCTC	4 cut(s)	344, 479, 583, 792
BstMBI	GATC	5 cut(s)	18, 40, 121, 274, 636
BstMWI	GCNNNNNNNGC	1 cut(s)	552
BstNI	CCWGG	2 cut(s)	336, 344
BstNSI	RCATGY	1 cut(s)	841
BstPAI	GACNNNNGTC	1 cut(s)	540
BstPI	GGTNACC	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	334, 342
BstSFI	CTRYAG	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	740
BtsIMutI	CAGTG	3 cut(s)	183, 759, 930
Cac8I	GCNNGC	1 cut(s)	603
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	5 cut(s)	130, 301, 441, 715, 921
CviAII	CATG	6 cut(s)	296, 490, 533, 741, 838, 868
CviQI	GTAC	5 cut(s)	130, 301, 441, 715, 921
DdeI	CTNAG	4 cut(s)	324, 426, 762, 850
DpnI	GATC	5 cut(s)	20, 42, 123, 276, 638
DpnII	GATC	5 cut(s)	18, 40, 121, 274, 636
EaeI	YGGCCR	1 cut(s)	256
Eco130I	CCWWGG	4 cut(s)	83, 116, 420, 740
Eco31I	GGTCTC	2 cut(s)	344, 479
Eco32I	GATATC	1 cut(s)	932
Eco91I	GGTNACC	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoO65I	GGTNACC	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	334, 342
EcoRV	GATATC	1 cut(s)	932
EcoT14I	CCWWGG	4 cut(s)	83, 116, 420, 740
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	4 cut(s)	83, 116, 420, 740
FaeI	CATG	6 cut(s)	299, 493, 536, 744, 841, 871
FatI	CATG	6 cut(s)	295, 489, 532, 740, 837, 867
FauNDI	CATATG	2 cut(s)	571, 751
FbaI	TGATCA	1 cut(s)	40
FspBI	CTAG	4 cut(s)	84, 216, 774, 918
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	6 cut(s)	299, 493, 536, 744, 841, 871
HinfI	GANTC	4 cut(s)	404, 541, 659, 823
HphI	GGTGA	5 cut(s)	284, 324, 633, 729, 834
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	45, 947
Hpy188III	TCNNGA	4 cut(s)	144, 634, 656, 852
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	2 cut(s)	388, 896
HpyCH4III	ACNGT	2 cut(s)	681, 925
HpyCH4V	TGCA	4 cut(s)	65, 295, 626, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	552
HpyF3I	CTNAG	4 cut(s)	324, 426, 762, 850
Hsp92II	CATG	6 cut(s)	299, 493, 536, 744, 841, 871
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	18, 40, 121, 274, 636
LmnI	GCTCC	3 cut(s)	268, 610, 689
LweI	GCATC	2 cut(s)	36, 504
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	4 cut(s)	84, 216, 774, 918
MaeIII	GTNAC	5 cut(s)	220, 330, 681, 735, 840
MalI	GATC	5 cut(s)	20, 42, 123, 276, 638
MboI	GATC	5 cut(s)	18, 40, 121, 274, 636
MboII	GAAGA	3 cut(s)	97, 100, 654
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	5 cut(s)	24, 651, 700, 790, 896
MlyI	GAGTC	1 cut(s)	550
MnlI	CCTC	4 cut(s)	317, 475, 605, 880
Mph1103I	ATGCAT	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	372, 650
MspR9I	CCNGG	2 cut(s)	336, 344
MvaI	CCWGG	2 cut(s)	336, 344
MwoI	GCNNNNNNNGC	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	740
NdeI	CATATG	2 cut(s)	571, 751
NdeII	GATC	5 cut(s)	18, 40, 121, 274, 636
NlaIII	CATG	6 cut(s)	299, 493, 536, 744, 841, 871
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	3 cut(s)	330, 735, 840
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	404, 659, 823
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
PshAI	GACNNNNGTC	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	334, 342
PspEI	GGTNACC	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	2 cut(s)	334, 342
PspN4I	GGNNCC	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	636
RsaI	GTAC	5 cut(s)	131, 302, 442, 716, 922
RsaNI	GTAC	5 cut(s)	130, 301, 441, 715, 921
SaqAI	TTAA	2 cut(s)	372, 650
Sau3AI	GATC	5 cut(s)	18, 40, 121, 274, 636
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	2 cut(s)	336, 344
SduI	GDGCHC	1 cut(s)	265
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	36, 504
SfcI	CTRYAG	1 cut(s)	624
SmlI	CTYRAG	2 cut(s)	142, 516
SmoI	CTYRAG	2 cut(s)	142, 516
SpeI	ACTAGT	1 cut(s)	917
Sse9I	AATT	5 cut(s)	24, 651, 700, 790, 896
SsiI	CCGC	3 cut(s)	196, 232, 304
SspMI	CTAG	4 cut(s)	84, 216, 774, 918
StyD4I	CCNGG	2 cut(s)	334, 342
StyI	CCWWGG	4 cut(s)	83, 116, 420, 740
TaaI	ACNGT	2 cut(s)	681, 925
TaqI	TCGA	5 cut(s)	124, 154, 277, 446, 479
TasI	AATT	5 cut(s)	24, 651, 700, 790, 896
TatI	WGTACW	2 cut(s)	440, 920
TfiI	GAWTC	3 cut(s)	404, 659, 823
Tru1I	TTAA	2 cut(s)	372, 650
Tru9I	TTAA	2 cut(s)	372, 650
TscAI	CASTG	3 cut(s)	190, 766, 930
TseFI	GTSAC	3 cut(s)	330, 735, 840
Tsp45I	GTSAC	3 cut(s)	330, 735, 840
TspDTI	ATGAA	5 cut(s)	49, 588, 768, 768, 836
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	3 cut(s)	190, 766, 930
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	2 cut(s)	24, 790
XceI	RCATGY	1 cut(s)	841
XmaJI	CCTAGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	4 cut(s)	84, 216, 774, 918
ZrmI	AGTACT	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.