Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8279167.1

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 845

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8279167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 656 bp

cggaaaagaccgcaaggttgtctgccaatctagtgttactggataccgcaagacccttgttttctatcgtggacgtgctcctttaggtgatcgaacagagtggattatgcatgagtaccgcctcaatgatgattttgctcaggggtcaccaggtcatcagggagtttttgctttgtgccgtgttgttaaaaagaaagagcatacacagaaggcaaatgattccaatggagaacccaaggctaagactactggaagtacttcgagcaatggggatttgacctcaacaagaaactcgaatgagaccttcagcatctctgctggaatgtcatctcaagtgaactaccagcatgacgagagtcgccattcaagccatactacttctccatatgaagtctctccaatggcagagtttgagccagctccaagaggcaccaatcctgcagacttctggatctcacctgacttaattcttgattcttcaaaggactacccacaattacaaggagctgtgcctaattacttcccccagtacgagtttccaagcacaatgtcaccatggcagtcatatgaacacactgagatttcgcctagttcatcatactcaaattttggagacttccaaatggcagatgatatgaatcaaatggccagcatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

218

Amino Acids

24.39

Weight (kDa)

5.62

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	429
AciI	CCGC	3 cut(s)	11, 47, 119
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	117, 257, 531
AgsI	TTSAA	2 cut(s)	367, 481
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	420, 507
AluI	AGCT	2 cut(s)	420, 507
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	294, 398, 607
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	646
ApoI	RAATTY	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	99, 139, 448, 544
BalI	TGGCCA	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	36
BcoDI	GTCTC	3 cut(s)	294, 398, 607
BfaI	CTAG	2 cut(s)	31, 589
BfmI	CTRYAG	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	36
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	521
BoxI	GACNNNNGTC	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	235, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bse1I	ACTGG	3 cut(s)	44, 254, 527
Bse3DI	GCAATG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	235, 555
BseJI	GATNNNNATC	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	153, 568
BseNI	ACTGG	3 cut(s)	44, 254, 527
BshFI	GGCC	1 cut(s)	648
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	294, 398, 607
BsnI	GGCC	1 cut(s)	648
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	89, 451
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	3 cut(s)	11, 47, 119
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	2 cut(s)	152, 569
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	44, 254, 527
BssECI	CCNNGG	2 cut(s)	235, 555
BssMI	GATC	2 cut(s)	89, 451
BssT1I	CCWWGG	2 cut(s)	235, 555
Bst2UI	CCWGG	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	418, 650
BstDEI	CTNAG	3 cut(s)	139, 241, 577
BstDSI	CCRYGG	1 cut(s)	555
BstEII	GGTNACC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	92, 454
BstMAI	GTCTC	3 cut(s)	294, 398, 607
BstMBI	GATC	2 cut(s)	89, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	656
BstPAI	GACNNNNGTC	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	418, 650
CsiI	ACCWGGT	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	116, 256, 530
CviAII	CATG	4 cut(s)	111, 348, 556, 653
CviJI	RGCY	6 cut(s)	240, 370, 416, 420, 507, 648
CviKI_1	RGCY	6 cut(s)	240, 370, 416, 420, 507, 648
CviQI	GTAC	3 cut(s)	116, 256, 530
DdeI	CTNAG	3 cut(s)	139, 241, 577
DpnI	GATC	2 cut(s)	91, 453
DpnII	GATC	2 cut(s)	89, 451
EaeI	YGGCCR	1 cut(s)	646
Eco130I	CCWWGG	2 cut(s)	235, 555
Eco31I	GGTCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	235, 555
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	235, 555
FaeI	CATG	4 cut(s)	114, 351, 559, 656
FatI	CATG	4 cut(s)	110, 347, 555, 652
FauNDI	CATATG	2 cut(s)	386, 566
FspBI	CTAG	2 cut(s)	31, 589
HaeIII	GGCC	1 cut(s)	648
Hin1II	CATG	4 cut(s)	114, 351, 559, 656
HinfI	GANTC	4 cut(s)	219, 356, 474, 638
HphI	GGTGA	4 cut(s)	99, 139, 448, 544
Hpy166II	GTNNAC	2 cut(s)	72, 338
Hpy188III	TCNNGA	2 cut(s)	449, 471
Hpy8I	GTNNAC	2 cut(s)	72, 338
HpyAV	CCTTC	2 cut(s)	203, 314
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	110, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	3 cut(s)	139, 241, 577
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	114, 351, 559, 656
Kzo9I	GATC	2 cut(s)	89, 451
LmnI	GCTCC	3 cut(s)	83, 425, 504
LweI	GCATC	1 cut(s)	319
MabI	ACCWGGT	1 cut(s)	149
MaeI	CTAG	2 cut(s)	31, 589
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	3 cut(s)	35, 145, 550
MalI	GATC	2 cut(s)	91, 453
MboI	GATC	2 cut(s)	89, 451
MboII	GAAGA	1 cut(s)	469
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	648
MluCI	AATT	4 cut(s)	466, 495, 515, 605
MluNI	TGGCCA	1 cut(s)	648
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	3 cut(s)	132, 290, 420
Mox20I	TGGCCA	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	2 cut(s)	187, 465
Msp20I	TGGCCA	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	555
NdeI	CATATG	2 cut(s)	386, 566
NdeII	GATC	2 cut(s)	89, 451
NlaIII	CATG	4 cut(s)	114, 351, 559, 656
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	2 cut(s)	145, 550
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	219, 474, 638
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	3 cut(s)	117, 257, 531
RsaNI	GTAC	3 cut(s)	116, 256, 530
SaqAI	TTAA	2 cut(s)	187, 465
Sau3AI	GATC	2 cut(s)	89, 451
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	9 cut(s)	19, 77, 89, 155, 282, 306, 422, 461, 509
SexAI	ACCWGGT	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	4 cut(s)	466, 495, 515, 605
SsiI	CCGC	3 cut(s)	11, 47, 119
SspMI	CTAG	2 cut(s)	31, 589
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	235, 555
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	92, 261, 294
TasI	AATT	4 cut(s)	466, 495, 515, 605
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	219, 474, 638
Tru1I	TTAA	2 cut(s)	187, 465
Tru9I	TTAA	2 cut(s)	187, 465
TscAI	CASTG	1 cut(s)	581
TseFI	GTSAC	2 cut(s)	145, 550
Tsp45I	GTSAC	2 cut(s)	145, 550
TspDTI	ATGAA	4 cut(s)	403, 583, 583, 651
TspRI	CASTG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	31, 589
ZrmI	AGTACT	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.