Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Reverse (-)

4430568 .. 4433387

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G040400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGTGGAGCATCACTACCACCAGGTTTTAGGTTCCACCCAACTGATGAGGAACTAGTGGGATATTATCTTAAAAGAAAAGTGGAAGGTCTTGAATTTGAACTGGAGGTTATCCCTGTGATCGATTTGTACAAATTTGATCCCTGGGAGTTACCAGAAAAATCATTCCTTCCTAGATGTGACATGGAATGGTTCTTCTTCTGTGCACGTGATCGAAAGTATCCAAATGGCTCAAGAACAAACAGAGCTACTAAAGCTGGCTACTGGAAGGCCACTGGAAAAGACCGGAAGGTTGTCTGTCAATCCACTGTCACTGGGTACCGCAAGACCCTTGTTTTCTATCGTGGACGTGCTCCTTTAGGAGATAGAACAGATTGGATCATGCATGAATACCGTCTCAGTGATGATCTTGCTCAGGGGCCATCAGGTCATCAGGGAGTTTTTGCTTTGTGCCGTGTTATTAAAAAGAATGAGAATGCACAGAAGACAAATGATTCCCATGGAGAGCCCAAGGCCAAGAGGGTTGGAAGTGCTTCGAACAGTGGGGAGGATTTGAGCTCAACAAGAATCTCAAACGAGCCCTTGAACATCTCTGATGATTTATCCTCTCGAGCGAGTTACCAGCATAACGAGAGTCATTATTCAAGCCATGTTACTTCTCCATATGAAGTTAATCCAATGGCAGAGTTTGATCCAACTTCAAGAGAGACCAACCCTGCAGACTTCTGGGTCTCGCCTGATTTTATTCTTGATTCTTCGAAGGACTACCCACAGTTACAAGAAGCTATGCCTAATTACTTTCCACAGTACAAAAGTGCAATGGCATCATGGCAGTCATATGAAAACACAGAATCACCTTATTCCTCATACCCAAATTTCACAGGGGACGTAACAATGGCCGATAATGCGAATCAAGTAGCCGACATGTCACCTTTCTCTGGACACACAGGCTACATGGGCTATTATGGGAATGAGGAAATGCAATTTGAAGGTTTTGACCAGCCTAGTTCACTGAGAAATCCAACATCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

345

Amino Acids

39.14

Weight (kDa)

5.28

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	728
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	3 cut(s)	134, 386, 686
AcoI	YGGCCR	1 cut(s)	897
AcsI	RAATTY	3 cut(s)	95, 134, 874
AcvI	CACGTG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	131, 320, 809
AfiI	CCNNNNNNNGG	1 cut(s)	938
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	6 cut(s)	95, 101, 586, 645, 702, 989
AhlI	ACTAGT	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	22, 143
AluBI	AGCT	4 cut(s)	248, 257, 558, 785
AluI	AGCT	4 cut(s)	248, 257, 558, 785
Alw21I	GWGCWC	3 cut(s)	208, 355, 560
Alw26I	GTCTC	3 cut(s)	401, 701, 736
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	134, 386, 686
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	4 cut(s)	270, 419, 513, 897
ApaLI	GTGCAC	1 cut(s)	204
ApoI	RAATTY	3 cut(s)	95, 134, 874
Asp700I	GAANNNNTTC	1 cut(s)	532
Asp718I	GGTACC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	846, 921
AsuII	TTCGAA	2 cut(s)	536, 758
AvaI	CYCGRG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	3 cut(s)	510, 560, 582
BbrPI	CACGTG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	3 cut(s)	208, 355, 560
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	2 cut(s)	24, 145
BciVI	GTATCC	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	401, 701, 736
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	3 cut(s)	56, 174, 1005
BfmI	CTRYAG	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	231
Bme1390I	CCNGG	2 cut(s)	24, 145
BmeT110I	CYCGRG	1 cut(s)	609
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	3 cut(s)	35, 320, 420
BmrFI	CCNGG	2 cut(s)	24, 145
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	20, 833
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	2 cut(s)	536, 758
BpuEI	CTTGAG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	2 cut(s)	701, 736
BsaJI	CCNNGG	4 cut(s)	143, 144, 499, 510
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	938
Bse1I	ACTGG	4 cut(s)	108, 269, 280, 319
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	2 cut(s)	24, 145
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	4 cut(s)	143, 144, 499, 510
BseGI	GGATG	1 cut(s)	1025
BseLI	CCNNNNNNNGG	1 cut(s)	938
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	412, 428, 1004
BseNI	ACTGG	4 cut(s)	108, 269, 280, 319
BseSI	GKGCMC	1 cut(s)	208
BshFI	GGCC	4 cut(s)	272, 421, 515, 899
BshNI	GGYRCC	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	3 cut(s)	208, 355, 560
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	1 cut(s)	938
BsmAI	GTCTC	3 cut(s)	401, 701, 736
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	4 cut(s)	272, 421, 515, 899
Bso31I	GGTCTC	2 cut(s)	701, 736
BsoBI	CYCGRG	1 cut(s)	609
Bsp119I	TTCGAA	2 cut(s)	536, 758
Bsp1286I	GDGCHC	5 cut(s)	208, 355, 510, 560, 582
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	4 cut(s)	272, 421, 515, 899
BspCNI	CTCAG	3 cut(s)	411, 427, 1005
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	35, 320, 420
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	3 cut(s)	134, 386, 686
BspT104I	TTCGAA	2 cut(s)	536, 758
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	2 cut(s)	701, 736
BsrDI	GCAATG	1 cut(s)	825
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	108, 269, 280, 319
BssECI	CCNNGG	4 cut(s)	143, 144, 499, 510
BssMI	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
BssT1I	CCWWGG	2 cut(s)	499, 510
Bst2UI	CCWGG	2 cut(s)	24, 145
Bst4CI	ACNGT	5 cut(s)	310, 395, 542, 774, 807
BstAUI	TGTACA	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	209
BstBI	TTCGAA	2 cut(s)	536, 758
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	398, 414, 1013
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	1025
BstKTI	GATC	6 cut(s)	123, 142, 214, 381, 409, 694
BstMAI	GTCTC	3 cut(s)	401, 701, 736
BstMBI	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 905, 957
BstNI	CCWGG	2 cut(s)	24, 145
BstNSI	RCATGY	1 cut(s)	928
BstSCI	CCNGG	2 cut(s)	22, 143
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	491
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	272, 421, 515, 899
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	1025
BtsIMutI	CAGTG	6 cut(s)	273, 306, 312, 406, 547, 1010
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	130, 319, 808
CviAII	CATG	8 cut(s)	184, 382, 386, 500, 650, 828, 925, 955
CviQI	GTAC	3 cut(s)	130, 319, 808
DdeI	CTNAG	3 cut(s)	398, 414, 1013
DpnI	GATC	6 cut(s)	122, 141, 213, 380, 408, 693
DpnII	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
EaeI	YGGCCR	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	499, 510
Eco24I	GRGCYC	3 cut(s)	510, 560, 582
Eco31I	GGTCTC	2 cut(s)	701, 736
Eco53kI	GAGCTC	1 cut(s)	558
Eco72I	CACGTG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	22, 143
EcoT14I	CCWWGG	2 cut(s)	499, 510
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	3 cut(s)	510, 560, 582
ErhI	CCWWGG	2 cut(s)	499, 510
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	8 cut(s)	187, 385, 389, 503, 653, 831, 928, 958
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	8 cut(s)	183, 381, 385, 499, 649, 827, 924, 954
FauNDI	CATATG	2 cut(s)	664, 838
FokI	GGATG	1 cut(s)	1012
FriOI	GRGCYC	3 cut(s)	510, 560, 582
FspBI	CTAG	3 cut(s)	56, 174, 1005
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	4 cut(s)	272, 421, 515, 899
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	8 cut(s)	187, 385, 389, 503, 653, 831, 928, 958
HinfI	GANTC	6 cut(s)	494, 567, 634, 752, 851, 910
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	2 cut(s)	846, 921
Hpy166II	GTNNAC	3 cut(s)	206, 347, 1010
Hpy188I	TCNGA	2 cut(s)	595, 1034
Hpy188III	TCNNGA	6 cut(s)	92, 234, 609, 702, 749, 939
Hpy8I	GTNNAC	3 cut(s)	206, 347, 1010
HpyAV	CCTTC	6 cut(s)	80, 179, 262, 283, 754, 983
HpyCH4III	ACNGT	5 cut(s)	310, 395, 542, 774, 807
HpyCH4IV	ACGT	3 cut(s)	208, 349, 888
HpyCH4V	TGCA	6 cut(s)	206, 385, 479, 719, 818, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 905, 957
HpyF3I	CTNAG	3 cut(s)	398, 414, 1013
HpySE526I	ACGT	3 cut(s)	208, 349, 888
Hsp92II	CATG	8 cut(s)	187, 385, 389, 503, 653, 831, 928, 958
KpnI	GGTACC	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
LmnI	GCTCC	2 cut(s)	8, 358
LweI	GCATC	2 cut(s)	20, 833
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	3 cut(s)	56, 174, 1005
MaeII	ACGT	3 cut(s)	208, 349, 888
MaeIII	GTNAC	8 cut(s)	150, 179, 310, 617, 652, 774, 889, 927
MalI	GATC	6 cut(s)	122, 141, 213, 380, 408, 693
MboI	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
MboII	GAAGA	4 cut(s)	187, 190, 496, 747
MhlI	GDGCHC	5 cut(s)	208, 355, 510, 560, 582
MluCI	AATT	5 cut(s)	95, 134, 793, 874, 983
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	505, 719
MnlI	CCTC	7 cut(s)	43, 100, 513, 541, 616, 874, 967
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	3 cut(s)	72, 462, 672
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	24, 145
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	24, 145
MwoI	GCNNNNNNNGC	3 cut(s)	254, 905, 957
NcoI	CCATGG	1 cut(s)	499
NdeI	CATATG	2 cut(s)	664, 838
NdeII	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
NlaIII	CATG	8 cut(s)	187, 385, 389, 503, 653, 831, 928, 958
NlaIV	GGNNCC	3 cut(s)	35, 320, 420
NmuCI	GTSAC	3 cut(s)	179, 310, 927
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	928
NspV	TTCGAA	2 cut(s)	536, 758
PaeR7I	CTCGAG	1 cut(s)	609
PasI	CCCWGGG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	924
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	5 cut(s)	494, 567, 752, 851, 910
PleI	GAGTC	1 cut(s)	642
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	642
Ppu21I	YACGTR	1 cut(s)	209
PscI	ACATGT	1 cut(s)	924
Psp124BI	GAGCTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	22, 143
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	22, 143
PspN4I	GGNNCC	3 cut(s)	35, 320, 420
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	721
RsaI	GTAC	3 cut(s)	131, 320, 809
RsaNI	GTAC	3 cut(s)	130, 319, 808
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	3 cut(s)	72, 462, 672
Sau3AI	GATC	6 cut(s)	120, 139, 211, 378, 406, 691
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	24, 145
SduI	GDGCHC	5 cut(s)	208, 355, 510, 560, 582
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	20, 833
SfcI	CTRYAG	1 cut(s)	717
Sfr274I	CTCGAG	1 cut(s)	609
SfuI	TTCGAA	2 cut(s)	536, 758
SlaI	CTCGAG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	232, 609
SmoI	CTYRAG	2 cut(s)	232, 609
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	5 cut(s)	95, 134, 793, 874, 983
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	3 cut(s)	56, 174, 1005
SstI	GAGCTC	1 cut(s)	560
StyD4I	CCNGG	2 cut(s)	22, 143
StyI	CCWWGG	2 cut(s)	499, 510
TaaI	ACNGT	5 cut(s)	310, 395, 542, 774, 807
TaiI	ACGT	3 cut(s)	211, 352, 891
TaqI	TCGA	5 cut(s)	123, 214, 536, 610, 758
TasI	AATT	5 cut(s)	95, 134, 793, 874, 983
TatI	WGTACW	2 cut(s)	129, 807
TfiI	GAWTC	5 cut(s)	494, 567, 752, 851, 910
Tru1I	TTAA	3 cut(s)	72, 462, 672
Tru9I	TTAA	3 cut(s)	72, 462, 672
TscAI	CASTG	6 cut(s)	280, 313, 319, 406, 547, 1017
TseFI	GTSAC	3 cut(s)	179, 310, 927
Tsp45I	GTSAC	3 cut(s)	179, 310, 927
TspDTI	ATGAA	3 cut(s)	402, 681, 855
TspRI	CASTG	6 cut(s)	280, 313, 319, 406, 547, 1017
VneI	GTGCAC	1 cut(s)	204
XapI	RAATTY	3 cut(s)	95, 134, 874
XceI	RCATGY	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	3 cut(s)	56, 174, 1005
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.