Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

38318415 .. 38319265

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0345200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCCAAGAAAGGTTATGCTAATTTGGAAGAGGAACTAGAATTAGGGACTGAAGAAGATATAGATAGAGCCATTTTATGGAAGAAATGGCGTGTTGATAAAAAGGGTAACTATTTAAGTGAGACAACCAAACAACGGGCTGAGAAAATTGATGCTTTAACGAAAGAAGTTCAAGAGGGAATTGTGTCTGCTATTGGTAGGAATGACATTTTGACGCAAGCTTTGGAGACGCCTGAGCAATCAGGCCGTGTAAGAGGTGCTGGAGCATTTGTTACACACAAGGTATACTTCAATACATCTAGGTATAAGCCCGCAACCAAGACAGAAATGTTGGAACACCAGTTGGAATTGATGCAAAACCAGATCAACATGTTTTCTTCATTATTGGATCCTGATAAGTTGGATCCAGCTAAACTAAGCATAATGCGAGAGATGTTCAGATCTAATAATGCATCTGAAAAAACTAGTTTCTCAGTAGACAAGGAGAAAAATGAGTCTTCTAAGGAGGAGGTATCTAGGATGGCATCCAAGAAAGAATTTGAGAAAAAGCTGCTGCAAAAAAGGTTCGAAAAGTGGATGACATTCCATCTCCAATTGACAGCAGTAAGGAGAGCAAGAAGCTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

209

Amino Acids

24.34

Weight (kDa)

9.2

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	2 - 93	5.8e-06	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccI	GTMKAC	2 cut(s)	285, 477
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	4 cut(s)	383, 396, 398, 411
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	78, 135
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	173, 292
AhlI	ACTAGT	1 cut(s)	464
AluBI	AGCT	4 cut(s)	221, 410, 550, 621
AluI	AGCT	4 cut(s)	221, 410, 550, 621
Alw26I	GTCTC	2 cut(s)	116, 221
AlwI	GGATC	4 cut(s)	383, 396, 398, 411
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	550, 553
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsuII	TTCGAA	1 cut(s)	567
BamHI	GGATCC	2 cut(s)	388, 403
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	537, 540
BccI	CCATC	2 cut(s)	514, 594
BceAI	ACGGC	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	116, 221
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	4 cut(s)	38, 300, 465, 516
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	2 cut(s)	551, 554
BlsI	GCNGC	2 cut(s)	552, 555
BmiI	GGNNCC	2 cut(s)	390, 405
BmsI	GCATC	4 cut(s)	142, 342, 461, 533
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 135
Bse1I	ACTGG	1 cut(s)	340
BseGI	GGATG	3 cut(s)	524, 525, 582
BseLI	CCNNNNNNNGG	2 cut(s)	78, 135
BseMII	CTCAG	3 cut(s)	132, 225, 486
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	2 cut(s)	537, 540
BshFI	GGCC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	78, 135
BsmAI	GTCTC	2 cut(s)	116, 221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	363, 388, 403, 440
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	3 cut(s)	133, 226, 485
BspLI	GGNNCC	2 cut(s)	390, 405
BspPI	GGATC	4 cut(s)	383, 396, 398, 411
BspT104I	TTCGAA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	4 cut(s)	363, 388, 403, 440
BssNAI	GTATAC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	230
Bst1107I	GTATAC	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	219, 312
BstDEI	CTNAG	5 cut(s)	141, 234, 416, 472, 501
BstF5I	GGATG	3 cut(s)	524, 525, 582
BstKTI	GATC	4 cut(s)	366, 391, 406, 443
BstMAI	GTCTC	2 cut(s)	116, 221
BstMBI	GATC	4 cut(s)	363, 388, 403, 440
BstNSI	RCATGY	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	537, 540
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	3 cut(s)	388, 403, 440
BstYI	RGATCY	3 cut(s)	388, 403, 440
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	524, 525, 582
Cac8I	GCNNGC	2 cut(s)	219, 312
CseI	GACGC	2 cut(s)	223, 238
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	8 cut(s)	71, 140, 221, 246, 310, 410, 550, 621
CviKI_1	RGCY	8 cut(s)	71, 140, 221, 246, 310, 410, 550, 621
DdeI	CTNAG	5 cut(s)	141, 234, 416, 472, 501
DpnI	GATC	4 cut(s)	365, 390, 405, 442
DpnII	GATC	4 cut(s)	363, 388, 403, 440
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	18, 62, 79, 286, 306, 371, 422
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	369
FauI	CCCGC	1 cut(s)	319
FblI	GTMKAC	2 cut(s)	285, 477
Fnu4HI	GCNGC	2 cut(s)	551, 554
FokI	GGATG	3 cut(s)	511, 532, 589
Fsp4HI	GCNGC	2 cut(s)	551, 554
FspBI	CTAG	4 cut(s)	38, 300, 465, 516
GluI	GCNGC	2 cut(s)	551, 554
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	246
HgaI	GACGC	2 cut(s)	223, 238
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	219, 619
HinfI	GANTC	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	286, 478
Hpy188I	TCNGA	2 cut(s)	440, 457
Hpy188III	TCNNGA	2 cut(s)	173, 392
Hpy8I	GTNNAC	2 cut(s)	286, 478
HpyCH4V	TGCA	3 cut(s)	355, 452, 556
HpyF3I	CTNAG	5 cut(s)	141, 234, 416, 472, 501
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	363, 388, 403, 440
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	228, 246, 246, 353, 374, 405, 420
Lsp1109I	GCAGC	2 cut(s)	537, 540
LweI	GCATC	4 cut(s)	142, 342, 461, 533
MaeI	CTAG	4 cut(s)	38, 300, 465, 516
MaeIII	GTNAC	2 cut(s)	107, 271
MalI	GATC	4 cut(s)	365, 390, 405, 442
MboI	GATC	4 cut(s)	363, 388, 403, 440
MboII	GAAGA	6 cut(s)	41, 65, 68, 94, 369, 489
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	3 cut(s)	388, 403, 440
MluCI	AATT	7 cut(s)	22, 41, 147, 180, 347, 536, 593
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	3 cut(s)	312, 324, 381
MnlI	CCTC	5 cut(s)	25, 169, 248, 499, 502
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	2 cut(s)	116, 158
MunI	CAATTG	1 cut(s)	593
NdeII	GATC	4 cut(s)	363, 388, 403, 440
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	2 cut(s)	390, 405
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	373
NspV	TTCGAA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	369
PflMI	CCANNNNNTGG	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	552, 555
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	390, 405
PsuI	RGATCY	3 cut(s)	388, 403, 440
SaqAI	TTAA	2 cut(s)	116, 158
SatI	GCNGC	2 cut(s)	551, 554
Sau3AI	GATC	4 cut(s)	363, 388, 403, 440
SchI	GAGTC	1 cut(s)	503
SfaNI	GCATC	4 cut(s)	142, 342, 461, 533
SfuI	TTCGAA	1 cut(s)	567
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	7 cut(s)	22, 41, 147, 180, 347, 536, 593
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	4 cut(s)	38, 300, 465, 516
TaqI	TCGA	1 cut(s)	567
TasI	AATT	7 cut(s)	22, 41, 147, 180, 347, 536, 593
Tru1I	TTAA	2 cut(s)	116, 158
Tru9I	TTAA	2 cut(s)	116, 158
TseI	GCWGC	2 cut(s)	550, 553
TspDTI	ATGAA	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	285, 477
XspI	CTAG	4 cut(s)	38, 300, 465, 516
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.