Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

18905258 .. 18907052

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGAAGTTCATGTTTACCTCCAGGGTTCCGGTTTCATCCTACGGATGAAGAACTCATCGAATATTACTTGAAAAGAAAAGTCGAAGGTCTCGAGATTGAGCTTGAAGTCATTCCCGTCATCGATCTTTATAGTTTCGATCCTTGGGAGTTACCAGACAAGTCGTTTCTCCCAAACCGGGACATGGAATGGTACTTCTTCTGCTCAAGGGACAAAAAATATCCTAATGGTTTTCGTACAAATCGAGGAACAAAGGCTGGTTATTGGAAAGCAACCGGAAAAGATCGAAAAATTACTTCTCGTTCATCTTCTATAATTGGTTATAGAAAAACTCTAGTTTTCTACAAAGGCCGTGCCCCGTTAGGCGATAGAAGCAATTGGATCATGCATGAATATCGACTATGCGATGATGATACATCACAAGGATCACAAAATTTAAAGGGAGCTTTTGTGTTATGTCGTGTTGCTATGAAGAATGAGATCAAAACTAATACGAAAATCCGAAAAATTCCAAGCGAGCAAACAATCGGATCAGGAGAAAGCTCGGGTTTATCAAGCCGAGTAACGTCTCCTAGTCGCGATGAAACAATGCCGTTTCACTCATTTGCCAATCCTGTATCTACTGAAACTGATTCTTCCAACATTTGGATTTCACCTGAATTCATCCTCGATTCTTCAAAGGACTATCCTCAAATCCAAGATGTCGCATCTCAGTGCTTCCAACAAGACTTTGATTTTCCGATCATCGGTAACCAAAACATGGAGTTTCCAGCGAGTACAAGCTTAGATCAGAACATGGATGAGTTTATGCAAAACGGTTATTGGACAAATTATGGATACGATCAAACCGGTTTATTCGGTTACTCAGATTTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

292

Amino Acids

33.58

Weight (kDa)

5.17

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 134	5.1e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	645, 760
AccII	CGCG	1 cut(s)	579
AclWI	GGATC	4 cut(s)	134, 389, 433, 538
AcsI	RAATTY	3 cut(s)	433, 507, 659
AfaI	GTAC	3 cut(s)	194, 238, 778
AfiI	CCNNNNNNNGG	5 cut(s)	178, 184, 645, 746, 760
AgeI	ACCGGT	1 cut(s)	848
AgsI	TTSAA	3 cut(s)	73, 107, 678
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	103, 446, 543, 783
AluI	AGCT	4 cut(s)	103, 446, 543, 783
Alw26I	GTCTC	2 cut(s)	95, 573
AlwI	GGATC	4 cut(s)	134, 389, 433, 538
Ama87I	CYCGRG	2 cut(s)	92, 544
AoxI	GGCC	1 cut(s)	349
ApoI	RAATTY	3 cut(s)	433, 507, 659
AsiGI	ACCGGT	1 cut(s)	848
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	645
AvaI	CYCGRG	2 cut(s)	92, 544
BaeGI	GKGCMC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	336, 577
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	830
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	95, 573
BfaI	CTAG	3 cut(s)	335, 573, 877
BfuI	GTATCC	1 cut(s)	830
Bme1390I	CCNGG	2 cut(s)	24, 179
BmeT110I	CYCGRG	2 cut(s)	92, 544
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	24, 179
BmsI	GCATC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	23, 143
BsaWI	WCCGGW	3 cut(s)	30, 275, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 184, 645, 746, 760
Bse118I	RCCGGY	1 cut(s)	848
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	23, 143
BseGI	GGATG	4 cut(s)	37, 52, 663, 805
BseLI	CCNNNNNNNGG	5 cut(s)	178, 184, 645, 746, 760
BseMII	CTCAG	2 cut(s)	725, 879
BseSI	GKGCMC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	351
BshTI	ACCGGT	1 cut(s)	848
BshVI	ATCGAT	1 cut(s)	123
BsiHKCI	CYCGRG	2 cut(s)	92, 544
BsiSI	CCGG	4 cut(s)	31, 178, 276, 849
BslFI	GGGAC	2 cut(s)	194, 224
BslI	CCNNNNNNNGG	5 cut(s)	178, 184, 645, 746, 760
BsmAI	GTCTC	2 cut(s)	95, 573
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	2 cut(s)	194, 224
BsnI	GGCC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	92, 544
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp68I	TCGCGA	1 cut(s)	579
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	724, 878
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	134, 389, 433, 538
BspTNI	GGTCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	848
BssAI	RCCGGY	1 cut(s)	848
BssECI	CCNNGG	2 cut(s)	23, 143
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	711, 784, 865
BstEII	GGTNACC	1 cut(s)	749
BstF5I	GGATG	4 cut(s)	37, 52, 663, 805
BstFNI	CGCG	1 cut(s)	579
BstMAI	GTCTC	2 cut(s)	95, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	22, 177
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	1 cut(s)	579
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	2 cut(s)	420, 594
BtsCI	GGATG	4 cut(s)	37, 52, 663, 805
BtsIMutI	CAGTG	1 cut(s)	719
BtuMI	TCGCGA	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	848
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	193, 237, 777
CspAI	ACCGGT	1 cut(s)	848
CviAII	CATG	6 cut(s)	12, 184, 385, 389, 760, 796
CviJI	RGCY	7 cut(s)	103, 257, 351, 446, 543, 558, 783
CviKI_1	RGCY	7 cut(s)	103, 257, 351, 446, 543, 558, 783
CviQI	GTAC	3 cut(s)	193, 237, 777
DdeI	CTNAG	3 cut(s)	711, 784, 865
DraI	TTTAAA	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	95
Eco88I	CYCGRG	2 cut(s)	92, 544
Eco91I	GGTNACC	1 cut(s)	749
EcoO65I	GGTNACC	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	6 cut(s)	15, 187, 388, 392, 763, 799
FaqI	GGGAC	2 cut(s)	194, 224
FatI	CATG	6 cut(s)	11, 183, 384, 388, 759, 795
FokI	GGATG	4 cut(s)	24, 59, 650, 812
FspBI	CTAG	3 cut(s)	335, 573, 877
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	4 cut(s)	31, 178, 276, 849
Hin1II	CATG	6 cut(s)	15, 187, 388, 392, 763, 799
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	2 cut(s)	632, 671
HpaII	CCGG	4 cut(s)	31, 178, 276, 849
HphI	GGTGA	1 cut(s)	645
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	5 cut(s)	503, 530, 741, 792, 868
Hpy188III	TCNNGA	4 cut(s)	92, 94, 534, 578
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	2 cut(s)	388, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	3 cut(s)	711, 784, 865
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	6 cut(s)	15, 187, 388, 392, 763, 799
LmnI	GCTCC	1 cut(s)	443
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	3 cut(s)	335, 573, 877
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	4 cut(s)	150, 562, 749, 860
MboII	GAAGA	6 cut(s)	62, 190, 300, 484, 627, 666
MfeI	CAATTG	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	7 cut(s)	291, 315, 376, 433, 507, 659, 829
MmeI	TCCRAC	2 cut(s)	663, 745
MnlI	CCTC	4 cut(s)	30, 239, 677, 699
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	712
MspI	CCGG	4 cut(s)	31, 178, 276, 849
MspR9I	CCNGG	2 cut(s)	24, 179
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	179
NlaIII	CATG	6 cut(s)	15, 187, 388, 392, 763, 799
NlaIV	GGNNCC	1 cut(s)	29
NmeAIII	GCCGAG	1 cut(s)	584
NruI	TCGCGA	1 cut(s)	579
NsiI	ATGCAT	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 241
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	632, 671
PflMI	CCANNNNNTGG	2 cut(s)	645, 760
PinAI	ACCGGT	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	22
PspEI	GGTNACC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	579
RsaI	GTAC	3 cut(s)	194, 238, 778
RsaNI	GTAC	3 cut(s)	193, 237, 777
RseI	CAYNNNNRTG	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	24, 179
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	8 cut(s)	22, 91, 105, 448, 545, 569, 658, 785
SfaNI	GCATC	1 cut(s)	716
Sfr274I	CTCGAG	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	712
SmlI	CTYRAG	2 cut(s)	92, 205
SmoI	CTYRAG	2 cut(s)	92, 205
Sse9I	AATT	7 cut(s)	291, 315, 376, 433, 507, 659, 829
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	3 cut(s)	335, 573, 877
StyD4I	CCNGG	2 cut(s)	22, 177
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	818
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	9 cut(s)	60, 84, 93, 123, 138, 244, 286, 397, 669
TasI	AATT	7 cut(s)	291, 315, 376, 433, 507, 659, 829
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	632, 671
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	719
TspDTI	ATGAA	7 cut(s)	26, 63, 294, 405, 485, 597, 652
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	719
Van91I	CCANNNNNTGG	2 cut(s)	645, 760
XapI	RAATTY	3 cut(s)	433, 507, 659
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	3 cut(s)	335, 573, 877
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.