Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Reverse (-)

37477941 .. 37479455

Gene Structure 1515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1277000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGAGGAGCATCACTGCCACCAGGTTTCAGGTTCCACCCAACTGATGAGGAATTAGTTGGATATTACCTTCATAGAAAGGTGGAAGGGCTCGAATTTGAGCTTGAAGTTATTCCGGTGATCGATTTGTACAAATTCGATCCCTGGGAGTTGCCAGAAAAATCCTTCCTCCCAAGACGTGACATGGAATGGTTCTTCTTCTGTCCTCGGGATCGAAAGTATCCAAACGGTTCAAGAACAAATAGAGCTACTAAGGCAGGCTACTGGAAGGCCACTGGAAAAGACCGCAAGGTTGTTTGTCAATCTGATGTGACTGGGTATCGCAAGACCCTTGTGTTCTATCGTGGACGTGCTCCTCTAGGAGATAGAACAGACTGGATCATGCATGAGTACCGCCTCACCGATGATCTTGCTCCGGGGCCATCAGGTCATCAGCTATTGGATGTATTGGGTTATTTGGGTTGTGAGATTGCCAACACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

162

Amino Acids

18.68

Weight (kDa)

6.9

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	5.2e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	286, 394
AclWI	GGATC	3 cut(s)	134, 219, 386
AcsI	RAATTY	2 cut(s)	95, 134
AfaI	GTAC	2 cut(s)	131, 392
AgsI	TTSAA	2 cut(s)	107, 234
AjiI	CACGTC	2 cut(s)	179, 350
AjnI	CCWGG	2 cut(s)	22, 143
AluBI	AGCT	3 cut(s)	103, 248, 436
AluI	AGCT	3 cut(s)	103, 248, 436
Alw21I	GWGCWC	1 cut(s)	355
AlwI	GGATC	3 cut(s)	134, 219, 386
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	2 cut(s)	270, 419
ApoI	RAATTY	2 cut(s)	95, 134
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	130, 391
AvaI	CYCGRG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	355
BccI	CCATC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	2 cut(s)	24, 145
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	417
BfaI	CTAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	231
Bme1390I	CCNGG	3 cut(s)	24, 145, 417
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	2 cut(s)	179, 350
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	35, 420
BmrFI	CCNGG	3 cut(s)	24, 145, 417
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	123
BsaJI	CCNNGG	4 cut(s)	143, 144, 206, 416
BsaWI	WCCGGW	1 cut(s)	115
Bse1I	ACTGG	4 cut(s)	269, 280, 319, 380
BseBI	CCWGG	2 cut(s)	24, 145
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	4 cut(s)	143, 144, 206, 416
BseGI	GGATG	1 cut(s)	448
BseNI	ACTGG	4 cut(s)	269, 280, 319, 380
BseRI	GAGGAG	2 cut(s)	21, 345
BshFI	GGCC	2 cut(s)	272, 421
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	116, 416
BsnI	GGCC	2 cut(s)	272, 421
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	93, 355
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	120, 139, 211, 378, 406
BspACI	CCGC	2 cut(s)	286, 394
BspANI	GGCC	2 cut(s)	272, 421
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	35, 420
BspPI	GGATC	3 cut(s)	134, 219, 386
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	269, 280, 319, 380
BssECI	CCNNGG	4 cut(s)	143, 144, 206, 416
BssMI	GATC	5 cut(s)	120, 139, 211, 378, 406
Bst2UI	CCWGG	2 cut(s)	24, 145
Bst4CI	ACNGT	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	5 cut(s)	123, 142, 214, 381, 409
BstMBI	GATC	5 cut(s)	120, 139, 211, 378, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	24, 145
BstSCI	CCNGG	3 cut(s)	22, 143, 415
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	272, 421
BsuTUI	ATCGAT	1 cut(s)	123
BtrI	CACGTC	2 cut(s)	179, 350
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 273
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	130, 391
CviAII	CATG	3 cut(s)	184, 382, 386
CviJI	RGCY	7 cut(s)	91, 103, 248, 261, 272, 421, 436
CviKI_1	RGCY	7 cut(s)	91, 103, 248, 261, 272, 421, 436
CviQI	GTAC	2 cut(s)	130, 391
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	5 cut(s)	122, 141, 213, 380, 408
DpnII	GATC	5 cut(s)	120, 139, 211, 378, 406
Eco24I	GRGCYC	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	22, 143
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	3 cut(s)	187, 385, 389
FaiI	YATR	4 cut(s)	75, 185, 383, 387
FatI	CATG	3 cut(s)	183, 381, 385
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	272, 421
HapII	CCGG	2 cut(s)	116, 416
Hin1II	CATG	3 cut(s)	187, 385, 389
HpaII	CCGG	2 cut(s)	116, 416
HphI	GGTGA	2 cut(s)	130, 391
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	209, 234
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	80, 80, 175, 262
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	178, 349
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	178, 349
Hsp92II	CATG	3 cut(s)	187, 385, 389
Kzo9I	GATC	5 cut(s)	120, 139, 211, 378, 406
LmnI	GCTCC	3 cut(s)	8, 358, 418
LweI	GCATC	1 cut(s)	20
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	178, 349
MaeIII	GTNAC	2 cut(s)	179, 310
MalI	GATC	5 cut(s)	122, 141, 213, 380, 408
MboI	GATC	5 cut(s)	120, 139, 211, 378, 406
MboII	GAAGA	2 cut(s)	187, 190
MhlI	GDGCHC	2 cut(s)	93, 355
MluCI	AATT	3 cut(s)	53, 95, 134
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	43, 179, 216, 366, 407
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	111
MspI	CCGG	2 cut(s)	116, 416
MspR9I	CCNGG	3 cut(s)	24, 145, 417
MvaI	CCWGG	2 cut(s)	24, 145
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	5 cut(s)	120, 139, 211, 378, 406
NlaIII	CATG	3 cut(s)	187, 385, 389
NlaIV	GGNNCC	2 cut(s)	35, 420
NmuCI	GTSAC	2 cut(s)	179, 310
NsiI	ATGCAT	1 cut(s)	387
PasI	CCCWGGG	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	22, 143
PspGI	CCWGG	2 cut(s)	22, 143
PspN4I	GGNNCC	2 cut(s)	35, 420
PspPI	GGNCC	1 cut(s)	419
RsaI	GTAC	2 cut(s)	131, 392
RsaNI	GTAC	2 cut(s)	130, 391
Sau3AI	GATC	5 cut(s)	120, 139, 211, 378, 406
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	24, 145, 417
SduI	GDGCHC	2 cut(s)	93, 355
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	20
Sse9I	AATT	3 cut(s)	53, 95, 134
SsiI	CCGC	2 cut(s)	286, 394
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	3 cut(s)	22, 143, 415
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	181, 352
TaqI	TCGA	4 cut(s)	93, 123, 138, 214
TasI	AATT	3 cut(s)	53, 95, 134
TatI	WGTACW	1 cut(s)	129
TscAI	CASTG	2 cut(s)	21, 280
TseFI	GTSAC	2 cut(s)	179, 310
Tsp45I	GTSAC	2 cut(s)	179, 310
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	21, 280
XapI	RAATTY	2 cut(s)	95, 134
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.