Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

3830614 .. 3833754

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1031700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGAGGAGCATCACTGCCACCAGGTTTCAGGTTTCACCCAACTGATGAGGAATTAGTTGGATATTACCTTCATAGAAAGGTGGAGGGGCTCGAATTTGAGCTTGAAGTTATTCCAGTGATCGATTTGTACAAATTCGATCCATGGGAGTTGCCAGAGAAATCCTTCCTCCCTAGACGTGATATGGAATGGTTTTTCTTCTGTCCCCGGGATCGAAAGTATCCAAACGGCTCAAGAACAAATAGAGCTACTAAAGCTGGCTACTGGAAGGCCACTGGAAAAGACCGCAAGGTTGTTTGTCAATCTGGTGTGAAAGGATACCGAAAGACCCTTGTTTTTTACCGCGGACGTGCTCCTTTAGGAGATAGAACAGACTGGATCATGCATGAGTACCGCCTCAATGATGATCTTGCTCAGGGAACATCAGGTCATCAGGGAGTCTTTGCTTTGTGCCGTGTTGTTAAAAAGAATGAGCATGCACACAAGACACATGATTCCCATGGAGAGCCAAAGGCCAAGAGGGTTGGAAGCGCTTCGAGCAGTGGGGAGGATATGACCTCAACAAGAATCTTAAAAGAGCCCTTGAGCATCTCTGCTGATACATCATCTCAAGCGAGTTACCTGCATAGCGAGAGTCGTTATTCAAGCCGTGCTACTTCTCCACATGAAGTTAATCCAATGGCAGAGTTTGAGCCAGCTTCAAGGGAGACCAACCCTGCAGACTTCTGGGTCTCACCTGATTTGATTCTTGATTCTTCTAAGGACTACCCACAGTTGCAAAAAGCTATGCCTAATTACTTTCAGCAGTACGAGTTTCCAAGCACAATGTCGCCGTGGCAGTCGTATGAACCCAGAGAATCACCCAGCTCGTCATACTCGAATTTCACGGGGGACCTTAAAATGGCCGATGATGTGAATCAAATGGGCGGCATGTCACCATTCTCTGGACACACAGACTACATGGGTTACTATGGGAATGAGGAAATGCAATTTGAAGGGTCTGAAACATGGGATGGCCAAGCTCTAATTTGCAGGCAAGTGAGCGCAGATGGGAGTTTGGGGGAATTAGGAGGACTTTGGTTACAGGAAGACAATATGGTCATTGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

371

Amino Acids

42.01

Weight (kDa)

5.53

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	8.9e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	728, 1097
Acc36I	ACCTGC	1 cut(s)	630
AccB7I	CCANNNNNTGG	1 cut(s)	944
AccII	CGCG	1 cut(s)	345
AciI	CCGC	5 cut(s)	286, 343, 345, 394, 927
AclWI	GGATC	3 cut(s)	134, 219, 386
AcoI	YGGCCR	2 cut(s)	903, 1015
AcsI	RAATTY	3 cut(s)	95, 134, 880
AfaI	GTAC	3 cut(s)	131, 392, 809
AfeI	AGCGCT	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	901, 944
AgsI	TTSAA	4 cut(s)	107, 645, 702, 995
AjiI	CACGTC	2 cut(s)	179, 350
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	7 cut(s)	103, 248, 257, 698, 785, 867, 1022
AluI	AGCT	7 cut(s)	103, 248, 257, 698, 785, 867, 1022
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	701, 736
AlwI	GGATC	3 cut(s)	134, 219, 386
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	532
AoxI	GGCC	4 cut(s)	270, 513, 903, 1015
ApoI	RAATTY	3 cut(s)	95, 134, 880
Asp700I	GAANNNNTTC	3 cut(s)	111, 164, 532
AspLEI	GCGC	2 cut(s)	533, 1046
AspS9I	GGNCC	1 cut(s)	892
AsuC2I	CCSGG	2 cut(s)	208, 209
AsuHPI	GGTGA	4 cut(s)	29, 726, 852, 927
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	892
BalI	TGGCCA	1 cut(s)	1017
BanII	GRGCYC	2 cut(s)	93, 582
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	1 cut(s)	355
BccI	CCATC	2 cut(s)	1007, 1043
BceAI	ACGGC	4 cut(s)	244, 438, 633, 817
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	2 cut(s)	231, 311
BcnI	CCSGG	2 cut(s)	208, 209
BcoDI	GTCTC	2 cut(s)	701, 736
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	630
BfuI	GTATCC	2 cut(s)	231, 311
BisI	GCNGC	1 cut(s)	928
BlsI	GCNGC	1 cut(s)	929
Bme1390I	CCNGG	3 cut(s)	24, 208, 209
Bme18I	GGWCC	1 cut(s)	892
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	2 cut(s)	179, 350
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	893
BmrFI	CCNGG	3 cut(s)	24, 208, 209
BmsI	GCATC	2 cut(s)	20, 597
BpiI	GAAGAC	1 cut(s)	1095
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	3 cut(s)	217, 594, 604
BpuMI	CCSGG	2 cut(s)	208, 209
Bsa29I	ATCGAT	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	915
BsaI	GGTCTC	2 cut(s)	701, 736
BsaJI	CCNNGG	6 cut(s)	143, 206, 207, 343, 499, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	901, 944
Bse1I	ACTGG	4 cut(s)	116, 269, 280, 380
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	6 cut(s)	143, 206, 207, 343, 499, 833
BseGI	GGATG	1 cut(s)	1018
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	2 cut(s)	901, 944
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	4 cut(s)	116, 269, 280, 380
BseRI	GAGGAG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	4 cut(s)	272, 515, 905, 1017
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	189, 905
BslI	CCNNNNNNNGG	2 cut(s)	901, 944
BsmAI	GTCTC	2 cut(s)	701, 736
BsmFI	GGGAC	2 cut(s)	189, 905
BsnI	GGCC	4 cut(s)	272, 515, 905, 1017
Bso31I	GGTCTC	2 cut(s)	701, 736
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	93, 355, 582
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	120, 139, 211, 378, 406
Bsp19I	CCATGG	2 cut(s)	143, 499
BspACI	CCGC	5 cut(s)	286, 343, 345, 394, 927
BspANI	GGCC	4 cut(s)	272, 515, 905, 1017
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	893
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	3 cut(s)	134, 219, 386
BspTNI	GGTCTC	2 cut(s)	701, 736
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	116, 269, 280, 380
BssECI	CCNNGG	6 cut(s)	143, 206, 207, 343, 499, 833
BssMI	GATC	5 cut(s)	120, 139, 211, 378, 406
BssT1I	CCWWGG	2 cut(s)	143, 499
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	774
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	259, 477, 696, 1034
BstDEI	CTNAG	2 cut(s)	414, 759
BstDSI	CCRYGG	4 cut(s)	143, 343, 499, 833
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	533, 1046
BstKTI	GATC	5 cut(s)	123, 142, 214, 381, 409
BstMAI	GTCTC	2 cut(s)	701, 736
BstMBI	GATC	5 cut(s)	120, 139, 211, 378, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 537
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	479, 934
BstSCI	CCNGG	3 cut(s)	22, 206, 207
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	1095
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	2 cut(s)	231, 311
BsuRI	GGCC	4 cut(s)	272, 515, 905, 1017
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	4 cut(s)	143, 343, 499, 833
BtrI	CACGTC	2 cut(s)	179, 350
BtsCI	GGATG	1 cut(s)	1018
BtsI	GCAGTG	2 cut(s)	14, 547
BtsIMutI	CAGTG	4 cut(s)	14, 123, 273, 547
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	259, 477, 696, 1034
CfoI	GCGC	2 cut(s)	533, 1046
Cfr13I	GGNCC	1 cut(s)	892
Cfr42I	CCGCGG	1 cut(s)	346
Cfr9I	CCCGGG	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	130, 391, 808
CviQI	GTAC	3 cut(s)	130, 391, 808
DdeI	CTNAG	2 cut(s)	414, 759
DpnI	GATC	5 cut(s)	122, 141, 213, 380, 408
DpnII	GATC	5 cut(s)	120, 139, 211, 378, 406
DrdI	GACNNNNNNGTC	2 cut(s)	728, 1097
DseDI	GACNNNNNNGTC	2 cut(s)	728, 1097
EaeI	YGGCCR	2 cut(s)	903, 1015
Eco130I	CCWWGG	2 cut(s)	143, 499
Eco24I	GRGCYC	2 cut(s)	93, 582
Eco31I	GGTCTC	2 cut(s)	701, 736
Eco47I	GGWCC	1 cut(s)	892
Eco47III	AGCGCT	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	143, 499
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	2 cut(s)	93, 582
ErhI	CCWWGG	2 cut(s)	143, 499
FaqI	GGGAC	2 cut(s)	189, 905
Fnu4HI	GCNGC	1 cut(s)	928
FokI	GGATG	1 cut(s)	1025
FriOI	GRGCYC	2 cut(s)	93, 582
Fsp4HI	GCNGC	1 cut(s)	928
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	2 cut(s)	532, 1045
GluI	GCNGC	1 cut(s)	928
GsaI	CCCAGC	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	4 cut(s)	272, 515, 905, 1017
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	2 cut(s)	533, 1046
Hin6I	GCGC	2 cut(s)	531, 1044
HinP1I	GCGC	2 cut(s)	531, 1044
HinfI	GANTC	8 cut(s)	438, 494, 567, 634, 745, 752, 857, 916
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	4 cut(s)	29, 726, 852, 927
Hpy188I	TCNGA	1 cut(s)	1003
Hpy188III	TCNNGA	3 cut(s)	234, 749, 945
HpyAV	CCTTC	4 cut(s)	80, 175, 262, 989
HpyCH4III	ACNGT	1 cut(s)	774
HpyCH4IV	ACGT	2 cut(s)	178, 349
HpyCH4V	TGCA	7 cut(s)	385, 479, 625, 719, 778, 988, 1032
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 537
HpyF3I	CTNAG	2 cut(s)	414, 759
HpySE526I	ACGT	2 cut(s)	178, 349
HspAI	GCGC	2 cut(s)	531, 1044
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	120, 139, 211, 378, 406
LmnI	GCTCC	2 cut(s)	8, 358
LweI	GCATC	2 cut(s)	20, 597
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	178, 349
MaeIII	GTNAC	4 cut(s)	617, 933, 965, 1080
MalI	GATC	5 cut(s)	122, 141, 213, 380, 408
MboI	GATC	5 cut(s)	120, 139, 211, 378, 406
MboII	GAAGA	3 cut(s)	190, 747, 1100
MhlI	GDGCHC	3 cut(s)	93, 355, 582
MlsI	TGGCCA	1 cut(s)	1017
MluCI	AATT	8 cut(s)	53, 95, 134, 793, 880, 989, 1026, 1064
MluNI	TGGCCA	1 cut(s)	1017
MlyI	GAGTC	2 cut(s)	447, 643
MmeI	TCCRAC	2 cut(s)	40, 505
MnlI	CCTC	9 cut(s)	43, 79, 179, 407, 513, 541, 568, 973, 1064
Mox20I	TGGCCA	1 cut(s)	1017
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	3 cut(s)	111, 164, 532
MscI	TGGCCA	1 cut(s)	1017
MseI	TTAA	4 cut(s)	462, 572, 672, 897
MslI	CAYNNNNRTG	1 cut(s)	1106
Msp20I	TGGCCA	1 cut(s)	1017
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	3 cut(s)	24, 208, 209
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	254, 537
NciI	CCSGG	2 cut(s)	208, 209
NcoI	CCATGG	2 cut(s)	143, 499
NdeII	GATC	5 cut(s)	120, 139, 211, 378, 406
NlaIV	GGNNCC	1 cut(s)	893
NmuCI	GTSAC	1 cut(s)	933
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	2 cut(s)	479, 934
PaeI	GCATGC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	875
PdmI	GAANNNNTTC	3 cut(s)	111, 164, 532
PfeI	GAWTC	6 cut(s)	494, 567, 745, 752, 857, 916
PflMI	CCANNNNNTGG	1 cut(s)	944
PkrI	GCNGC	1 cut(s)	929
PleI	GAGTC	2 cut(s)	446, 642
PpsI	GAGTC	2 cut(s)	446, 642
PpuMI	RGGWCCY	1 cut(s)	892
Psp5II	RGGWCCY	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	893
PspPI	GGNCC	1 cut(s)	892
PspPPI	RGGWCCY	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	721
RsaI	GTAC	3 cut(s)	131, 392, 809
RsaNI	GTAC	3 cut(s)	130, 391, 808
RseI	CAYNNNNRTG	1 cut(s)	1106
SacII	CCGCGG	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	462, 572, 672, 897
SatI	GCNGC	1 cut(s)	928
Sau3AI	GATC	5 cut(s)	120, 139, 211, 378, 406
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	2 cut(s)	447, 643
ScrFI	CCNGG	3 cut(s)	24, 208, 209
SduI	GDGCHC	3 cut(s)	93, 355, 582
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	20, 597
SfcI	CTRYAG	1 cut(s)	717
Sfr303I	CCGCGG	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	892
SmaI	CCCGGG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	1106
SmlI	CTYRAG	3 cut(s)	232, 583, 609
SmoI	CTYRAG	3 cut(s)	232, 583, 609
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	8 cut(s)	53, 95, 134, 793, 880, 989, 1026, 1064
SsiI	CCGC	5 cut(s)	286, 343, 345, 394, 927
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	22, 206, 207
StyI	CCWWGG	2 cut(s)	143, 499
TaaI	ACNGT	1 cut(s)	774
TaiI	ACGT	2 cut(s)	181, 352
TaqI	TCGA	6 cut(s)	93, 123, 138, 214, 536, 878
TasI	AATT	8 cut(s)	53, 95, 134, 793, 880, 989, 1026, 1064
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	930
TfiI	GAWTC	6 cut(s)	494, 567, 745, 752, 857, 916
Tru1I	TTAA	4 cut(s)	462, 572, 672, 897
Tru9I	TTAA	4 cut(s)	462, 572, 672, 897
TscAI	CASTG	4 cut(s)	21, 123, 280, 547
TseFI	GTSAC	1 cut(s)	933
Tsp45I	GTSAC	1 cut(s)	933
TspDTI	ATGAA	3 cut(s)	62, 681, 861
TspMI	CCCGGG	1 cut(s)	207
TspRI	CASTG	4 cut(s)	21, 123, 280, 547
Van91I	CCANNNNNTGG	1 cut(s)	944
VpaK11BI	GGWCC	1 cut(s)	892
XapI	RAATTY	3 cut(s)	95, 134, 880
XceI	RCATGY	2 cut(s)	479, 934
XmaI	CCCGGG	1 cut(s)	207
XmnI	GAANNNNTTC	3 cut(s)	111, 164, 532
XspI	CTAG	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.