Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

25282142 .. 25282958

Gene Structure 817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATGATTTTGCTCAGGGGTCACCAGGTCATCAGGTACATATGGTTATGGTTTAGTACTGAAATGGGAGTTTTTGCTTTGTGCCGTGTTGTTAAAAAGAAAGAGCATACACAGAAGGCAAATGATTCCAATGGAGAACCCAAGGCTAAGACGACTGGAAGTACTTCGAGCAATGGGGATTTGACCTCAACAAGAAACTCGAATGAGACCTTGAGCATCTCTGCTGGAATGTCATCTCAAGTGAACTACCAGCATGACGAGAGTCGCCATTCAAGCCATACTACTTCTCCATATGAAGTCTCTCCAATGGCAGAGTTTGAGCCAGCTCCAAGAGGCACCAATCCTGCAGACTTCTGGATCTCACCTGACTTAATTCTTGATTCTTCAAAGGACTACCCACAGTTACAAGGAGCTGTGCCTAATTACTTCCCCCAGTACGAGTTTCCAAGTACAATGTCACCATGGCAGTCATATGAACACACTGAGATTTCGCCTAGTTCATCATACTCAAATTTTGGAGACTTCCAAATGGCAGATGATATGAATCAAATGGCCAGCATGTCACCTTTCTCAGGACACACAGACTACATGGGTTATTGTGGAAATAAGGGATTGCAATTTGAAGGTTTTGACCAGACTAGTACAGTGAGATATCCAAATCACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

222

Amino Acids

25.03

Weight (kDa)

5.26

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	6 cut(s)	38, 58, 163, 437, 451, 643
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	273, 387, 623
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	326, 413
AluI	AGCT	2 cut(s)	326, 413
Alw26I	GTCTC	3 cut(s)	200, 304, 513
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	511
Asp700I	GAANNNNTTC	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	14, 354, 450, 555
BalI	TGGCCA	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	200, 304, 513
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	495, 639
BfmI	CTRYAG	1 cut(s)	345
BmcAI	AGTACT	2 cut(s)	58, 163
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	427
BoxI	GACNNNNGTC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	222, 232
BsaBI	GATNNNNATC	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	141, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	160, 433
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	141, 461
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	3 cut(s)	28, 474, 585
BseNI	ACTGG	2 cut(s)	160, 433
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	3 cut(s)	200, 304, 513
BsnI	GGCC	1 cut(s)	554
Bso31I	GGTCTC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	461
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	3 cut(s)	27, 475, 584
BspLI	GGNNCC	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	160, 433
BssECI	CCNNGG	2 cut(s)	141, 461
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	141, 461
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	402, 646
BstC8I	GCNNGC	2 cut(s)	324, 556
BstDEI	CTNAG	4 cut(s)	14, 147, 483, 571
BstDSI	CCRYGG	1 cut(s)	461
BstEII	GGTNACC	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	3 cut(s)	200, 304, 513
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	562
BstPAI	GACNNNNGTC	1 cut(s)	261
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	480, 651
Cac8I	GCNNGC	2 cut(s)	324, 556
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	6 cut(s)	37, 57, 162, 436, 450, 642
CviAII	CATG	4 cut(s)	254, 462, 559, 589
CviJI	RGCY	6 cut(s)	146, 276, 322, 326, 413, 554
CviKI_1	RGCY	6 cut(s)	146, 276, 322, 326, 413, 554
CviQI	GTAC	6 cut(s)	37, 57, 162, 436, 450, 642
DdeI	CTNAG	4 cut(s)	14, 147, 483, 571
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	552
Eco130I	CCWWGG	2 cut(s)	141, 461
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	653
Eco91I	GGTNACC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoO65I	GGTNACC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	653
EcoT14I	CCWWGG	2 cut(s)	141, 461
ErhI	CCWWGG	2 cut(s)	141, 461
FaeI	CATG	4 cut(s)	257, 465, 562, 592
FatI	CATG	4 cut(s)	253, 461, 558, 588
FauNDI	CATATG	3 cut(s)	41, 292, 472
FspBI	CTAG	2 cut(s)	495, 639
HaeIII	GGCC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	257, 465, 562, 592
HinfI	GANTC	4 cut(s)	125, 262, 380, 544
HphI	GGTGA	4 cut(s)	14, 354, 450, 555
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	668
Hpy188III	TCNNGA	3 cut(s)	355, 377, 573
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	109, 617
HpyCH4III	ACNGT	2 cut(s)	402, 646
HpyCH4V	TGCA	2 cut(s)	347, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	4 cut(s)	14, 147, 483, 571
Hsp92II	CATG	4 cut(s)	257, 465, 562, 592
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	331, 410
LweI	GCATC	1 cut(s)	225
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	2 cut(s)	495, 639
MaeIII	GTNAC	4 cut(s)	20, 402, 456, 561
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	1 cut(s)	375
MflI	RGATCY	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	4 cut(s)	372, 421, 511, 617
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	196, 326
Mox20I	TGGCCA	1 cut(s)	554
MroXI	GAANNNNTTC	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	2 cut(s)	93, 371
Msp20I	TGGCCA	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	461
NdeI	CATATG	3 cut(s)	41, 292, 472
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	257, 465, 562, 592
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	3 cut(s)	20, 456, 561
NspI	RCATGY	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	125, 380, 544
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PshAI	GACNNNNGTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	6 cut(s)	38, 58, 163, 437, 451, 643
RsaNI	GTAC	6 cut(s)	37, 57, 162, 436, 450, 642
SaqAI	TTAA	2 cut(s)	93, 371
Sau3AI	GATC	1 cut(s)	357
ScaI	AGTACT	2 cut(s)	58, 163
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	9 cut(s)	30, 38, 188, 212, 328, 367, 415, 568, 628
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	211, 237
SmoI	CTYRAG	2 cut(s)	211, 237
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	4 cut(s)	372, 421, 511, 617
SspMI	CTAG	2 cut(s)	495, 639
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	141, 461
TaaI	ACNGT	2 cut(s)	402, 646
TaqI	TCGA	2 cut(s)	167, 200
TasI	AATT	4 cut(s)	372, 421, 511, 617
TatI	WGTACW	4 cut(s)	56, 161, 449, 641
TfiI	GAWTC	3 cut(s)	125, 380, 544
Tru1I	TTAA	2 cut(s)	93, 371
Tru9I	TTAA	2 cut(s)	93, 371
TscAI	CASTG	2 cut(s)	487, 651
TseFI	GTSAC	3 cut(s)	20, 456, 561
Tsp45I	GTSAC	3 cut(s)	20, 456, 561
TspDTI	ATGAA	4 cut(s)	309, 489, 489, 557
TspRI	CASTG	2 cut(s)	487, 651
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	2 cut(s)	495, 639
ZrmI	AGTACT	2 cut(s)	58, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.