Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001701.1

Orthogroup ID

OG0004373

Physical Location & Seq

Genomic Coordinates Forward (+)

24470 .. 26065

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001701.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgggaggggcatcactaccaccaggttttagattccacccaactgatgaggagttagtgggatactatcttagtagaaaagtggaggggcttgaatttgagctcgaagtaattcctgtgatcgatttgtacaaatttgacccctgggagctgccaggtaattgttatatcattctttttaactcgagaaatcgtttctccccaggcgagatatggaatggttcttcttctgtccaagggatcgcctcaagaacaaatcgagctactaaagctggctactggaaagccaccggaaaagaccgcaaggttgtctgccaatctagtgttactggataccgcaagacccttgttttctatcgtggacgtgctcctttaggtgatcgaacagagtggattatgcatgagtaccgcctcaatgatgattttgctcaggggtcaccaggtcatcagggagtttttgctttgtgccgtgttgttaaaaagaaagagcatacacagaaggcaaatgattccaatggagaacccaaggctaagactactggaagtacttcgagcaatggggatttgacctcaacaagaaactcgaatgagaccttcagcatctctgctggaatgtcatctcaagtgaactaccagcatgacgagagtcgccattcaagccatactgcttctccatatgaagtctctccaatggcagagtttgagccagctccaagaggcaccaatcctgcagacttctggatctcacctgacttaattcttgattcttcaaaggactacccacaattacaaggagctgtgcctaattacttcccccagtacgagtttccaagcacaatgtcaccatggcagtcatatgaacacactgagatttcgcctagttcatcatactcaaattttggagacttccaaatggcagatgatatgaatcaaatggccagcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

315

Amino Acids

35.3

Weight (kDa)

5.65

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17980 AT4G17980 AT5G46590 AT5G46590
fragaria_vesca	FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670 FvH4_5g21670
malus_domestica	MD06G1031700.v1.1 MD16G1277000.v1.1
prunus_persica	Prupe.5G040400_v2.0.a1 Prupe.5G040400_v2.0.a1
pyrus_communis	pycom06g02630 pycom16g24620
rosa_chinensis	RchiOBHm_Chr7g0209171
rosa_laevigata	RLG00000000566 RLG00000003160
rosa_multiflora	Rmu_co8279167.1_g000001 Rmu_sc0001701.1_g000002 Rmu_sc0001701.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218920 Rroxscaffold_3G00249680
rosa_rugosa	Rorug07G0109900 Rorug07G0345100 Rorug07G0345200
rosa_samantha	Rh7AG244100 Rh7BG239200 Rh7CG259500 Rh7DG250800 Rh7DG484600
rosa_wichuraiana	Rw7G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	719
AciI	CCGC	3 cut(s)	301, 337, 409
AclWI	GGATC	2 cut(s)	248, 749
AcoI	YGGCCR	1 cut(s)	936
AcsI	RAATTY	3 cut(s)	95, 134, 895
AcuI	CTGAAG	1 cut(s)	580
AfaI	GTAC	4 cut(s)	131, 407, 547, 821
AgsI	TTSAA	3 cut(s)	95, 657, 771
AjiI	CACGTC	1 cut(s)	365
AjnI	CCWGG	5 cut(s)	22, 143, 154, 202, 439
AluBI	AGCT	6 cut(s)	103, 151, 263, 272, 710, 797
AluI	AGCT	6 cut(s)	103, 151, 263, 272, 710, 797
Alw21I	GWGCWC	2 cut(s)	105, 370
Alw26I	GTCTC	3 cut(s)	584, 688, 897
AlwI	GGATC	2 cut(s)	248, 749
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	936
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	95, 134, 895
Asp700I	GAANNNNTTC	2 cut(s)	111, 547
AsuHPI	GGTGA	4 cut(s)	389, 429, 738, 834
AvaI	CYCGRG	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	938
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	105, 370
BbvI	GCAGC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	5 cut(s)	24, 145, 156, 204, 441
BciVI	GTATCC	2 cut(s)	56, 326
BcoDI	GTCTC	3 cut(s)	584, 688, 897
BfaI	CTAG	2 cut(s)	321, 879
BfmI	CTRYAG	1 cut(s)	729
BfuI	GTATCC	2 cut(s)	56, 326
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	5 cut(s)	24, 145, 156, 204, 441
BmeT110I	CYCGRG	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	5 cut(s)	24, 145, 156, 204, 441
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	2 cut(s)	20, 609
BmuI	ACTGGG	1 cut(s)	811
BoxI	GACNNNNGTC	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	232, 606
Bsa29I	ATCGAT	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	6 cut(s)	143, 144, 202, 235, 525, 845
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bse1I	ACTGG	4 cut(s)	284, 334, 544, 817
Bse3DI	GCAATG	1 cut(s)	562
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	5 cut(s)	24, 145, 156, 204, 441
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	6 cut(s)	143, 144, 202, 235, 525, 845
BseJI	GATNNNNATC	1 cut(s)	927
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	2 cut(s)	443, 858
BseNI	ACTGG	4 cut(s)	284, 334, 544, 817
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	938
BshNI	GGYRCC	1 cut(s)	719
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	105, 370
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	3 cut(s)	584, 688, 897
BsnI	GGCC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	105, 370
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	120, 240, 379, 741
Bsp19I	CCATGG	1 cut(s)	845
BspACI	CCGC	3 cut(s)	301, 337, 409
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	2 cut(s)	442, 859
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	721
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	2 cut(s)	248, 749
BspT107I	GGYRCC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	284, 334, 544, 817
BssECI	CCNNGG	6 cut(s)	143, 144, 202, 235, 525, 845
BssMI	GATC	4 cut(s)	120, 240, 379, 741
BssT1I	CCWWGG	3 cut(s)	235, 525, 845
Bst2UI	CCWGG	5 cut(s)	24, 145, 156, 204, 441
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	274, 708, 940
BstDEI	CTNAG	4 cut(s)	71, 429, 531, 867
BstDSI	CCRYGG	1 cut(s)	845
BstEII	GGTNACC	1 cut(s)	435
BstKTI	GATC	4 cut(s)	123, 243, 382, 744
BstMAI	GTCTC	3 cut(s)	584, 688, 897
BstMBI	GATC	4 cut(s)	120, 240, 379, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 657
BstNI	CCWGG	5 cut(s)	24, 145, 156, 204, 441
BstNSI	RCATGY	1 cut(s)	946
BstPAI	GACNNNNGTC	1 cut(s)	645
BstPI	GGTNACC	1 cut(s)	435
BstSCI	CCNGG	5 cut(s)	22, 143, 154, 202, 439
BstSFI	CTRYAG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	2 cut(s)	56, 326
BsuRI	GGCC	1 cut(s)	938
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	845
BtrI	CACGTC	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	3 cut(s)	274, 708, 940
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	2 cut(s)	22, 439
Csp6I	GTAC	4 cut(s)	130, 406, 546, 820
CviAII	CATG	4 cut(s)	401, 638, 846, 943
CviQI	GTAC	4 cut(s)	130, 406, 546, 820
DdeI	CTNAG	4 cut(s)	71, 429, 531, 867
DpnI	GATC	4 cut(s)	122, 242, 381, 743
DpnII	GATC	4 cut(s)	120, 240, 379, 741
EaeI	YGGCCR	1 cut(s)	936
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	3 cut(s)	235, 525, 845
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	435
EcoRII	CCWGG	5 cut(s)	22, 143, 154, 202, 439
EcoT14I	CCWWGG	3 cut(s)	235, 525, 845
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	3 cut(s)	235, 525, 845
FaeI	CATG	4 cut(s)	404, 641, 849, 946
FatI	CATG	4 cut(s)	400, 637, 845, 942
FauNDI	CATATG	2 cut(s)	676, 856
Fnu4HI	GCNGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	2 cut(s)	321, 879
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	4 cut(s)	404, 641, 849, 946
HinfI	GANTC	5 cut(s)	33, 509, 646, 764, 928
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	4 cut(s)	389, 429, 738, 834
Hpy166II	GTNNAC	2 cut(s)	362, 628
Hpy188III	TCNNGA	4 cut(s)	186, 249, 739, 761
Hpy8I	GTNNAC	2 cut(s)	362, 628
HpyAV	CCTTC	2 cut(s)	493, 604
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	400, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 657
HpyF3I	CTNAG	4 cut(s)	71, 429, 531, 867
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	4 cut(s)	404, 641, 849, 946
Kzo9I	GATC	4 cut(s)	120, 240, 379, 741
LmnI	GCTCC	4 cut(s)	148, 373, 715, 794
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	2 cut(s)	20, 609
MabI	ACCWGGT	2 cut(s)	22, 439
MaeI	CTAG	2 cut(s)	321, 879
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	3 cut(s)	325, 435, 840
MalI	GATC	4 cut(s)	122, 242, 381, 743
MboI	GATC	4 cut(s)	120, 240, 379, 741
MboII	GAAGA	3 cut(s)	216, 219, 759
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	2 cut(s)	105, 370
MlsI	TGGCCA	1 cut(s)	938
MluCI	AATT	8 cut(s)	95, 111, 134, 160, 756, 785, 805, 895
MluNI	TGGCCA	1 cut(s)	938
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	6 cut(s)	43, 79, 256, 422, 580, 710
Mox20I	TGGCCA	1 cut(s)	938
Mph1103I	ATGCAT	1 cut(s)	402
MroXI	GAANNNNTTC	2 cut(s)	111, 547
MscI	TGGCCA	1 cut(s)	938
MseI	TTAA	3 cut(s)	180, 477, 755
Msp20I	TGGCCA	1 cut(s)	938
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	5 cut(s)	24, 145, 156, 204, 441
MvaI	CCWGG	5 cut(s)	24, 145, 156, 204, 441
MwoI	GCNNNNNNNGC	2 cut(s)	269, 657
NcoI	CCATGG	1 cut(s)	845
NdeI	CATATG	2 cut(s)	676, 856
NdeII	GATC	4 cut(s)	120, 240, 379, 741
NlaIII	CATG	4 cut(s)	404, 641, 849, 946
NlaIV	GGNNCC	1 cut(s)	721
NmuCI	GTSAC	2 cut(s)	435, 840
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	946
PaeR7I	CTCGAG	1 cut(s)	184
PasI	CCCWGGG	1 cut(s)	144
PdmI	GAANNNNTTC	2 cut(s)	111, 547
PfeI	GAWTC	4 cut(s)	33, 509, 764, 928
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
PshAI	GACNNNNGTC	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	5 cut(s)	22, 143, 154, 202, 439
PspEI	GGTNACC	1 cut(s)	435
PspGI	CCWGG	5 cut(s)	22, 143, 154, 202, 439
PspN4I	GGNNCC	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	4 cut(s)	131, 407, 547, 821
RsaNI	GTAC	4 cut(s)	130, 406, 546, 820
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	180, 477, 755
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	4 cut(s)	120, 240, 379, 741
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	5 cut(s)	24, 145, 156, 204, 441
SduI	GDGCHC	2 cut(s)	105, 370
SexAI	ACCWGGT	2 cut(s)	22, 439
SfaNI	GCATC	2 cut(s)	20, 609
SfcI	CTRYAG	1 cut(s)	729
Sfr274I	CTCGAG	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	3 cut(s)	184, 247, 621
SmoI	CTYRAG	3 cut(s)	184, 247, 621
Sse9I	AATT	8 cut(s)	95, 111, 134, 160, 756, 785, 805, 895
SsiI	CCGC	3 cut(s)	301, 337, 409
SspMI	CTAG	2 cut(s)	321, 879
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	5 cut(s)	22, 143, 154, 202, 439
StyI	CCWWGG	3 cut(s)	235, 525, 845
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	7 cut(s)	105, 123, 185, 259, 382, 551, 584
TasI	AATT	8 cut(s)	95, 111, 134, 160, 756, 785, 805, 895
TatI	WGTACW	2 cut(s)	129, 545
TfiI	GAWTC	4 cut(s)	33, 509, 764, 928
Tru1I	TTAA	3 cut(s)	180, 477, 755
Tru9I	TTAA	3 cut(s)	180, 477, 755
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	2 cut(s)	435, 840
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	435, 840
TspDTI	ATGAA	4 cut(s)	693, 873, 873, 941
TspRI	CASTG	1 cut(s)	871
XapI	RAATTY	3 cut(s)	95, 134, 895
XceI	RCATGY	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	184
XmnI	GAANNNNTTC	2 cut(s)	111, 547
XspI	CTAG	2 cut(s)	321, 879
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.