Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

8554960 .. 8558765

Gene Structure 3806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0109900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGAAGGAGAAAACCTAGCAGCGATGGACCCATTAACATTGACTCCGACTCCGAACCCGAACCCGAACCCGAGTCCGACCTGAAGTGCTCGATTTCAGAGATTTACAATGATCAACTGTCAAAGCATCGAACATGTTGGATGCATGTATTAGCGGCTTCGAAAGCTCAAAGACAGAGCTTGACTCGGGGAGAAACTGAAGAGATCAAAAAGATATCCCCATGCTTTTTAACTTTTTCTCCTCACCGCCAGAGATCAACGAGGAGTGTTAAGCAAAAGAATGTCAGCCGTGAAGTGTCAAGAAAAACACAGAAGCAAGACTCTAAAACATGTTCAGTGTCAAGAAGAAAACCAGTGCCAGTCTCTCGAGCTTGTAGAGTGTCACCGAAGAAACAGAAGCTAGGCTCTGAGGCCTTTGAGTGCTACTTTGAGAACTTATGGAAGAGCTTCTCTGAGGACAAGAAAACTTCCTTCACATACTTTGACTGTTTATGGTTTTCCTTGTACATTAAACCAACCACCACAGACAAGGTGCTAACCTGGATTAAGAAGAAGCATATTTTTTCAAAGAAATATGTTTTTGTTCCTATTGTGTGCTGGAGTCACTGGAACCTACTAATATTGTGTCATTTTGGTGAGAATGTCGAATCAAAGACCCAAAGACCATGCATGTTGTTGCTTGATTCTCTTGAAATGGCAGATCCGAGGAGGCTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCATGGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTATGAAGAAAAACTGGTTTACATATGAAAGCTTGGATTGCTTCTGCCAGGAACTCTATTCCTCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

331

Amino Acids

38.95

Weight (kDa)

9.16

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	176 - 310	3.2e-11	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	814
AciI	CCGC	3 cut(s)	155, 247, 890
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	3 cut(s)	731, 792, 895
AcuI	CTGAAG	2 cut(s)	104, 219
AfaI	GTAC	1 cut(s)	506
AflIII	ACRYGT	2 cut(s)	134, 329
AgsI	TTSAA	2 cut(s)	567, 692
AjnI	CCWGG	2 cut(s)	539, 969
AluBI	AGCT	6 cut(s)	167, 180, 371, 400, 447, 954
AluI	AGCT	6 cut(s)	167, 180, 371, 400, 447, 954
Alw21I	GWGCWC	2 cut(s)	92, 889
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	3 cut(s)	71, 186, 366
AoxI	GGCC	2 cut(s)	411, 764
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	3 cut(s)	731, 792, 895
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	236, 375, 647
AsuII	TTCGAA	1 cut(s)	161
AvaI	CYCGRG	3 cut(s)	71, 186, 366
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	814
Bbv12I	GWGCWC	2 cut(s)	92, 889
BbvCI	CCTCAGC	1 cut(s)	985
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	541, 971
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	18, 401
BisI	GCNGC	2 cut(s)	22, 156
BlsI	GCNGC	2 cut(s)	23, 157
Bme1390I	CCNGG	2 cut(s)	541, 971
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	3 cut(s)	71, 186, 366
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	3 cut(s)	31, 611, 816
BmrFI	CCNGG	2 cut(s)	541, 971
BmsI	GCATC	2 cut(s)	132, 136
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BpmI	CTGGAG	1 cut(s)	619
Bpu10I	CCTNAGC	1 cut(s)	985
Bpu14I	TTCGAA	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	704
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 35, 59, 65, 223, 253
Bse1I	ACTGG	4 cut(s)	353, 359, 611, 941
Bse21I	CCTNAGG	1 cut(s)	810
BseBI	CCWGG	2 cut(s)	541, 971
BseDI	CCNNGG	1 cut(s)	704
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	4 cut(s)	399, 444, 759, 776
BseNI	ACTGG	4 cut(s)	353, 359, 611, 941
BseRI	GAGGAG	3 cut(s)	231, 277, 721
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	2 cut(s)	413, 766
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	2 cut(s)	92, 889
BsiHKCI	CYCGRG	3 cut(s)	71, 186, 366
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	413, 766
BsoBI	CYCGRG	3 cut(s)	71, 186, 366
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	92, 889
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	112, 204, 254, 700
BspACI	CCGC	3 cut(s)	155, 247, 890
BspANI	GGCC	2 cut(s)	413, 766
BspCNI	CTCAG	4 cut(s)	400, 445, 760, 777
BspLI	GGNNCC	3 cut(s)	31, 611, 816
BspPI	GGATC	1 cut(s)	695
BspQI	GCTCTTC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	814
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	4 cut(s)	353, 359, 611, 941
BssECI	CCNNGG	1 cut(s)	704
BssMI	GATC	4 cut(s)	112, 204, 254, 700
Bst2UI	CCWGG	2 cut(s)	541, 971
Bst4CI	ACNGT	2 cut(s)	120, 488
Bst6I	CTCTTC	3 cut(s)	195, 437, 750
BstAUI	TGTACA	1 cut(s)	504
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	6 cut(s)	408, 453, 768, 785, 810, 985
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	4 cut(s)	115, 207, 257, 703
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	4 cut(s)	112, 204, 254, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 909, 960
BstNI	CCWGG	2 cut(s)	541, 971
BstNSI	RCATGY	4 cut(s)	138, 149, 333, 673
BstSCI	CCNGG	2 cut(s)	539, 969
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	413, 766
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	342, 360, 604
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	8 cut(s)	135, 146, 222, 330, 666, 670, 877, 904
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	6 cut(s)	408, 453, 768, 785, 810, 985
DpnI	GATC	4 cut(s)	114, 206, 256, 702
DpnII	GATC	4 cut(s)	112, 204, 254, 700
Eam1104I	CTCTTC	3 cut(s)	195, 437, 750
EarI	CTCTTC	3 cut(s)	195, 437, 750
Eco147I	AGGCCT	2 cut(s)	413, 766
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	104, 219
Eco81I	CCTNAGG	1 cut(s)	810
Eco88I	CYCGRG	3 cut(s)	71, 186, 366
EcoRII	CCWGG	2 cut(s)	539, 969
EcoRV	GATATC	1 cut(s)	216
EcoT22I	ATGCAT	2 cut(s)	147, 671
FaeI	CATG	8 cut(s)	138, 149, 225, 333, 669, 673, 880, 907
FatI	CATG	8 cut(s)	134, 145, 221, 329, 665, 669, 876, 903
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	22, 156
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	22, 156
FspBI	CTAG	2 cut(s)	18, 401
GluI	GCNGC	2 cut(s)	22, 156
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	2 cut(s)	413, 766
Hin1II	CATG	8 cut(s)	138, 149, 225, 333, 669, 673, 880, 907
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	9 cut(s)	44, 50, 74, 184, 320, 601, 647, 683, 778
HphI	GGTGA	3 cut(s)	236, 375, 647
Hpy166II	GTNNAC	2 cut(s)	742, 942
Hpy188I	TCNGA	8 cut(s)	49, 55, 79, 100, 409, 454, 705, 786
Hpy188III	TCNNGA	4 cut(s)	300, 342, 366, 689
Hpy8I	GTNNAC	2 cut(s)	742, 942
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	2 cut(s)	120, 488
HpyCH4V	TGCA	2 cut(s)	145, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 909, 960
HpyF3I	CTNAG	6 cut(s)	408, 453, 768, 785, 810, 985
Hsp92II	CATG	8 cut(s)	138, 149, 225, 333, 669, 673, 880, 907
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	112, 204, 254, 700
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	1 cut(s)	892
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	132, 136
MaeI	CTAG	2 cut(s)	18, 401
MaeIII	GTNAC	2 cut(s)	381, 602
MalI	GATC	4 cut(s)	114, 206, 256, 702
MboI	GATC	4 cut(s)	112, 204, 254, 700
MboII	GAAGA	8 cut(s)	212, 357, 400, 454, 562, 767, 773, 940
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	2 cut(s)	92, 889
MluCI	AATT	5 cut(s)	731, 792, 847, 868, 895
MlyI	GAGTC	6 cut(s)	38, 44, 83, 178, 314, 610
MmeI	TCCRAC	3 cut(s)	72, 102, 119
Mph1103I	ATGCAT	2 cut(s)	147, 671
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	6 cut(s)	36, 230, 270, 510, 546, 867
MslI	CAYNNNNRTG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	541, 971
MvaI	CCWGG	2 cut(s)	541, 971
MwoI	GCNNNNNNNGC	3 cut(s)	164, 909, 960
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	4 cut(s)	112, 204, 254, 700
NlaIII	CATG	8 cut(s)	138, 149, 225, 333, 669, 673, 880, 907
NlaIV	GGNNCC	3 cut(s)	31, 611, 816
NmuCI	GTSAC	2 cut(s)	381, 602
NsiI	ATGCAT	2 cut(s)	147, 671
NspI	RCATGY	4 cut(s)	138, 149, 333, 673
NspV	TTCGAA	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	366
PceI	AGGCCT	2 cut(s)	413, 766
PciI	ACATGT	2 cut(s)	134, 329
PciSI	GCTCTTC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	647, 683, 778
PkrI	GCNGC	2 cut(s)	23, 157
PleI	GAGTC	6 cut(s)	38, 44, 82, 178, 314, 609
PpsI	GAGTC	6 cut(s)	38, 44, 82, 178, 314, 609
PscI	ACATGT	2 cut(s)	134, 329
PshBI	ATTAAT	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	539, 969
PspGI	CCWGG	2 cut(s)	539, 969
PspN4I	GGNNCC	3 cut(s)	31, 611, 816
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	6 cut(s)	36, 230, 270, 510, 546, 867
SatI	GCNGC	2 cut(s)	22, 156
Sau3AI	GATC	4 cut(s)	112, 204, 254, 700
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	6 cut(s)	38, 44, 83, 178, 314, 610
ScrFI	CCNGG	2 cut(s)	541, 971
SduI	GDGCHC	2 cut(s)	92, 889
SfaNI	GCATC	2 cut(s)	132, 136
Sfr274I	CTCGAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	5 cut(s)	731, 792, 847, 868, 895
SseBI	AGGCCT	2 cut(s)	413, 766
SsiI	CCGC	3 cut(s)	155, 247, 890
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	2 cut(s)	18, 401
StuI	AGGCCT	2 cut(s)	413, 766
StyD4I	CCNGG	2 cut(s)	539, 969
TaaI	ACNGT	2 cut(s)	120, 488
TaqI	TCGA	6 cut(s)	92, 130, 161, 367, 645, 714
TasI	AATT	5 cut(s)	731, 792, 847, 868, 895
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	647, 683, 778
Tru1I	TTAA	6 cut(s)	36, 230, 270, 510, 546, 867
Tru9I	TTAA	6 cut(s)	36, 230, 270, 510, 546, 867
TscAI	CASTG	3 cut(s)	342, 360, 611
TseFI	GTSAC	2 cut(s)	381, 602
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	2 cut(s)	381, 602
TspDTI	ATGAA	5 cut(s)	791, 853, 865, 941, 963
TspRI	CASTG	3 cut(s)	342, 360, 611
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	3 cut(s)	731, 792, 895
XceI	RCATGY	4 cut(s)	138, 149, 333, 673
XhoI	CTCGAG	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	2 cut(s)	18, 401
Zsp2I	ATGCAT	2 cut(s)	147, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.