Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001701.1

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Forward (+)

6951 .. 7494

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtatttcgaggaagaggaggaggcctttgagcacacactcctagtagtccatgaggtctcggtctataaaattccaccacggtcaacgtcgggtggtgacaagtccagtgagtggctccagtctgacaggatatggtcaggaagattgcgtgttgtgtcgtgcaaggaacagtgtgagatccgattggaggatccaagctccagtgagctctttgcagcttgctttgttttaaccaggccagcgcgagacctcagtggagatggtgaaactattaggataaatgtcaagcccaagcctacgagtgagactggaatgttgtcagccgctgggctatctgggtctgcaaagcctaaaccattgagcccccggggctggaaaaatcaagtcccctctgccaccaccttcccatggtccagttgctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

142

Amino Acids

15.71

Weight (kDa)

5.74

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	3 cut(s)	175, 188, 201
AcsI	RAATTY	1 cut(s)	72
AfiI	CCNNNNNNNGG	4 cut(s)	114, 190, 375, 411
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	201, 211, 221
AluI	AGCT	3 cut(s)	201, 211, 221
Alw21I	GWGCWC	2 cut(s)	36, 213
Alw26I	GTCTC	3 cut(s)	64, 243, 302
AlwI	GGATC	3 cut(s)	175, 188, 201
AlwNI	CAGNNNCTG	2 cut(s)	329, 423
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	2 cut(s)	24, 239
ApeKI	GCWGC	2 cut(s)	218, 423
ApoI	RAATTY	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	2 cut(s)	370, 371
AsuHPI	GGTGA	2 cut(s)	110, 278
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	414
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	213, 368
Bbv12I	GWGCWC	2 cut(s)	36, 213
BbvI	GCAGC	2 cut(s)	230, 410
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	370, 371
BcoDI	GTCTC	3 cut(s)	64, 243, 302
BfaI	CTAG	2 cut(s)	44, 427
BglI	GCCNNNNNGGC	1 cut(s)	372
BisI	GCNGC	3 cut(s)	219, 327, 424
BlsI	GCNGC	3 cut(s)	220, 328, 425
Bme1390I	CCNGG	3 cut(s)	238, 370, 371
Bme18I	GGWCC	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	2 cut(s)	119, 195
BmrFI	CCNGG	3 cut(s)	238, 370, 371
BpmI	CTGGAG	2 cut(s)	104, 187
BpuMI	CCSGG	2 cut(s)	370, 371
BsaI	GGTCTC	2 cut(s)	64, 243
BsaJI	CCNNGG	5 cut(s)	80, 368, 369, 370, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 190, 375, 411
Bse1I	ACTGG	5 cut(s)	108, 121, 204, 316, 417
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	5 cut(s)	80, 368, 369, 370, 410
BseLI	CCNNNNNNNGG	4 cut(s)	114, 190, 375, 411
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	5 cut(s)	108, 121, 204, 316, 417
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	2 cut(s)	230, 410
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	26, 241
BsiHKAI	GWGCWC	2 cut(s)	36, 213
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	4 cut(s)	114, 190, 375, 411
BsmAI	GTCTC	3 cut(s)	64, 243, 302
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	26, 241
Bso31I	GGTCTC	2 cut(s)	64, 243
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	36, 213, 368
Bsp143I	GATC	2 cut(s)	180, 193
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	26, 241
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	119, 195
BspPI	GGATC	3 cut(s)	175, 188, 201
BspTNI	GGTCTC	2 cut(s)	64, 243
BsrI	ACTGG	5 cut(s)	108, 121, 204, 316, 417
BssECI	CCNNGG	5 cut(s)	80, 368, 369, 370, 410
BssMI	GATC	2 cut(s)	180, 193
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	84, 174
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	223, 243
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	2 cut(s)	80, 410
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	183, 196
BstMAI	GTCTC	3 cut(s)	64, 243, 302
BstMBI	GATC	2 cut(s)	180, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	236, 368, 369
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	230, 410
BstX2I	RGATCY	2 cut(s)	180, 193
BstYI	RGATCY	2 cut(s)	180, 193
BsuRI	GGCC	2 cut(s)	26, 241
BtgI	CCRYGG	2 cut(s)	80, 410
BtsIMutI	CAGTG	4 cut(s)	115, 179, 211, 262
Cac8I	GCNNGC	2 cut(s)	223, 243
CaiI	CAGNNNCTG	2 cut(s)	329, 423
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	414
Cfr9I	CCCGGG	1 cut(s)	369
CviAII	CATG	2 cut(s)	53, 411
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	182, 195
DpnII	GATC	2 cut(s)	180, 193
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	213, 368
Eco31I	GGTCTC	2 cut(s)	64, 243
Eco47I	GGWCC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	2 cut(s)	213, 368
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	2 cut(s)	56, 414
FaiI	YATR	4 cut(s)	54, 69, 136, 412
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	52, 410
Fnu4HI	GCNGC	3 cut(s)	219, 327, 424
FriOI	GRGCYC	2 cut(s)	213, 368
Fsp4HI	GCNGC	3 cut(s)	219, 327, 424
FspBI	CTAG	2 cut(s)	44, 427
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	219, 327, 424
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	2 cut(s)	104, 187
HaeIII	GGCC	2 cut(s)	26, 241
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	56, 414
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	110, 278
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	127, 185
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	84, 174
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	165, 218, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	56, 414
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	180, 193
LmnI	GCTCC	2 cut(s)	123, 206
Lsp1109I	GCAGC	2 cut(s)	230, 410
MaeI	CTAG	2 cut(s)	44, 427
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	182, 195
MboI	GATC	2 cut(s)	180, 193
MboII	GAAGA	2 cut(s)	26, 156
MflI	RGATCY	2 cut(s)	180, 193
MhlI	GDGCHC	3 cut(s)	36, 213, 368
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	8 cut(s)	4, 10, 13, 16, 49, 184, 263, 403
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	3 cut(s)	238, 370, 371
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	372
NciI	CCSGG	2 cut(s)	370, 371
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	180, 193
NlaIII	CATG	2 cut(s)	56, 414
NlaIV	GGNNCC	2 cut(s)	119, 195
NmuCI	GTSAC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	220, 328, 425
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	119, 195
PspPI	GGNCC	1 cut(s)	414
PstNI	CAGNNNCTG	2 cut(s)	329, 423
PsuI	RGATCY	2 cut(s)	180, 193
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	3 cut(s)	219, 327, 424
Sau3AI	GATC	2 cut(s)	180, 193
Sau96I	GGNCC	1 cut(s)	414
ScrFI	CCNGG	3 cut(s)	238, 370, 371
SduI	GDGCHC	3 cut(s)	36, 213, 368
SetI	ASST	7 cut(s)	60, 92, 203, 213, 223, 255, 407
SinI	GGWCC	1 cut(s)	414
SmaI	CCCGGG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	44, 427
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	236, 368, 369
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	84, 174
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	9
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	1 cut(s)	72
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	4 cut(s)	115, 179, 211, 262
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	218, 423
Tsp45I	GTSAC	1 cut(s)	98
TspMI	CCCGGG	1 cut(s)	369
TspRI	CASTG	4 cut(s)	115, 179, 211, 262
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	72
XmaI	CCCGGG	1 cut(s)	369
XspI	CTAG	2 cut(s)	44, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.