Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

65367456 .. 65368014

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATCACGGCGACGATGAGGATTCTGAAGCTGCTGCTGGTGTGCGAGGTCGCGGTCTACAAAACCCCACTGCAGTCGACATCCGGCAGTGTCATGCAAGGACCAGCGCGAGATCCGACCAGAGGATCCAAACTCCAACGACCTCCGTCGAGACCATGCTCAACTTGTCACGCTTCTTCGTCCTTAAGATCAAGGACGGCACCGGCAAGCACGCCTTCGTTGGCCTCCAGTTCGTTGAGCACAACGAGTCATTCTATTTCAACAAGAAGAAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGTTGATGGCAGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

107

Amino Acids

12.23

Weight (kDa)

6.91

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	43 - 96	7.1e-11	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	2 cut(s)	58, 78
AccII	CGCG	2 cut(s)	54, 110
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	4 cut(s)	12, 108, 121, 134
AcuI	CTGAAG	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	2 cut(s)	32, 304
AluI	AGCT	2 cut(s)	32, 304
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	4 cut(s)	12, 108, 121, 134
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	32, 35
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	19, 22
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	2 cut(s)	25, 214
BcoDI	GTCTC	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	128, 202
BoxI	GACNNNNGTC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	19, 22
Bsh1236I	CGCG	2 cut(s)	54, 110
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	85, 204
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	4, 113, 126, 189
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	54, 110
BspLI	GGNNCC	2 cut(s)	128, 202
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	4 cut(s)	12, 108, 121, 134
BspT107I	GGYRCC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	4 cut(s)	4, 113, 126, 189
BstAFI	CTTAAG	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	209, 213
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	54, 110
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	7, 116, 129, 192
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	4, 113, 126, 189
BstPAI	GACNNNNGTC	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	2 cut(s)	54, 110
BstV1I	GCAGC	2 cut(s)	19, 22
BstX2I	RGATCY	2 cut(s)	113, 126
BstYI	RGATCY	2 cut(s)	113, 126
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	2 cut(s)	69, 95
BtsIMutI	CAGTG	2 cut(s)	69, 95
Cac8I	GCNNGC	2 cut(s)	209, 213
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	102
CviAII	CATG	2 cut(s)	95, 157
CviJI	RGCY	3 cut(s)	32, 225, 304
CviKI_1	RGCY	3 cut(s)	32, 225, 304
DpnI	GATC	4 cut(s)	6, 115, 128, 191
DpnII	GATC	4 cut(s)	4, 113, 126, 189
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	48
FaeI	CATG	2 cut(s)	98, 160
FaiI	YATR	2 cut(s)	96, 158
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	2 cut(s)	94, 156
FblI	GTMKAC	2 cut(s)	58, 78
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	33, 36
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	33, 36
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	85, 204
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	98, 160
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	23, 248
HpaII	CCGG	2 cut(s)	85, 204
Hpy166II	GTNNAC	2 cut(s)	59, 79
Hpy188I	TCNGA	2 cut(s)	28, 118
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	59, 79
Hpy99I	CGWCG	2 cut(s)	17, 152
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	74, 98
Hsp92II	CATG	2 cut(s)	98, 160
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	4, 113, 126, 189
LpnPI	CCDG	6 cut(s)	24, 98, 118, 134, 217, 242
Lsp1109I	GCAGC	2 cut(s)	19, 22
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	4 cut(s)	6, 115, 128, 191
MboI	GATC	4 cut(s)	4, 113, 126, 189
MboII	GAAGA	3 cut(s)	169, 280, 283
MflI	RGATCY	2 cut(s)	113, 126
MhlI	GDGCHC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	141, 161
MnlI	CCTC	5 cut(s)	13, 41, 117, 154, 236
MseI	TTAA	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	85, 204
MvnI	CGCG	2 cut(s)	54, 110
NdeII	GATC	4 cut(s)	4, 113, 126, 189
NlaIII	CATG	2 cut(s)	98, 160
NlaIV	GGNNCC	2 cut(s)	128, 202
NmuCI	GTSAC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	128, 202
PspPI	GGNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	113, 126
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	4 cut(s)	4, 113, 126, 189
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	4 cut(s)	34, 52, 146, 306
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	1 cut(s)	54
TaqI	TCGA	2 cut(s)	78, 150
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	76, 95
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	2 cut(s)	32, 35
Tsp45I	GTSAC	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	76, 95
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	102
XmiI	GTMKAC	2 cut(s)	58, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.