Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007363.1

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Forward (+)

17865 .. 18235

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007363.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggatcgcggcggcgacaaggattctgaagttgttgctggtgcgcgaggtagccgtgtaaaaaaccccgccgcggtcgacatccgggggtgtcgtgcaaggaccagcacgagatccgacttgaggatccaaactccaacgatctccgtcgagaccatgcttgactcgtcgtgctacttcgtccttaagatggaggacggcaccggcaagcacgccttcatcggcctcgagttcgtcaagtgcaatgaggcgttctatttcaagaagaagaagagagagagagagagagagagagaggttcagatgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

103

Amino Acids

11.65

Weight (kDa)

9.33

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	3 cut(s)	9, 46, 74
AciI	CCGC	5 cut(s)	9, 12, 69, 72, 74
AclWI	GGATC	4 cut(s)	12, 108, 121, 134
AcuI	CTGAAG	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	73, 123, 190
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	4 cut(s)	12, 108, 121, 134
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	109
BccI	CCATC	2 cut(s)	184, 298
BceAI	ACGGC	2 cut(s)	39, 214
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	3 cut(s)	10, 13, 72
BlsI	GCNGC	3 cut(s)	11, 14, 73
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	128, 202
BmrFI	CCNGG	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	72, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 123, 190
Bse118I	RCCGGY	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	72, 85
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	73, 123, 190
BseMI	GCAATG	1 cut(s)	250
Bsh1236I	CGCG	3 cut(s)	9, 46, 74
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	85, 204
BslI	CCNNNNNNNGG	3 cut(s)	73, 123, 190
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	4, 113, 126, 141
BspACI	CCGC	5 cut(s)	9, 12, 69, 72, 74
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	3 cut(s)	9, 46, 74
BspLI	GGNNCC	2 cut(s)	128, 202
BspPI	GGATC	4 cut(s)	12, 108, 121, 134
BspT107I	GGYRCC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	72, 85
BssMI	GATC	4 cut(s)	4, 113, 126, 141
BssSI	CACGAG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	209, 213
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	9, 46, 74
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	7, 116, 129, 144
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	4, 113, 126, 141
BstMCI	CGRYCG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	3 cut(s)	9, 46, 74
BstX2I	RGATCY	2 cut(s)	113, 126
BstYI	RGATCY	2 cut(s)	113, 126
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	209, 213
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	102
Cfr42I	CCGCGG	1 cut(s)	75
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	3 cut(s)	54, 225, 309
CviKI_1	RGCY	3 cut(s)	54, 225, 309
DpnI	GATC	4 cut(s)	6, 115, 128, 143
DpnII	GATC	4 cut(s)	4, 113, 126, 141
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	227
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	10, 13, 72
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	10, 13, 72
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	3 cut(s)	10, 13, 72
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	85, 204
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	23, 164
HpaII	CCGG	2 cut(s)	85, 204
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	28, 118, 303
Hpy188III	TCNNGA	2 cut(s)	151, 262
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	152, 172
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	98, 243
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	44
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	4 cut(s)	4, 113, 126, 141
LpnPI	CCDG	4 cut(s)	24, 98, 118, 217
MalI	GATC	4 cut(s)	6, 115, 128, 143
MboI	GATC	4 cut(s)	4, 113, 126, 141
MboII	GAAGA	3 cut(s)	277, 280, 283
MflI	RGATCY	2 cut(s)	113, 126
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	141, 161
MnlI	CCTC	6 cut(s)	41, 117, 187, 236, 241, 289
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	85, 204
MspR9I	CCNGG	1 cut(s)	86
MvnI	CGCG	3 cut(s)	9, 46, 74
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	4 cut(s)	4, 113, 126, 141
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	128, 202
PaeR7I	CTCGAG	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	11, 14, 73
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	128, 202
PspPI	GGNCC	1 cut(s)	102
PspXI	VCTCGAGB	1 cut(s)	227
PsuI	RGATCY	2 cut(s)	113, 126
SacII	CCGCGG	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	10, 13, 72
Sau3AI	GATC	4 cut(s)	4, 113, 126, 141
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	2 cut(s)	52, 300
Sfr274I	CTCGAG	1 cut(s)	227
Sfr303I	CCGCGG	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	121, 185, 227
SmoI	CTYRAG	3 cut(s)	121, 185, 227
SsiI	CCGC	5 cut(s)	9, 12, 69, 72, 74
StyD4I	CCNGG	1 cut(s)	84
TaqI	TCGA	3 cut(s)	78, 150, 228
TauI	GCSGC	3 cut(s)	12, 15, 74
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	102
XhoI	CTCGAG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.