Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

27438437 .. 27440820

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1181300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCGTTTGAGGACGAGGAGGAGGCGTTCGAGCACACGCTACTCGTGGTCCGGGAGGTCGCAGTCTTCAAAATCCCGCCGCGGAGCACTTCCGGCGGATACAAGTGCGGCGAGTGGCTCCAGTCCGATAAGATCTGGTCGGGTCGGCTCCGGGTCGTGTCGTGCAAGGACCGGTGCGAGATCCGGCTGGAGGATCCGAACTCCAGCGAGCTCTTCGCCGCCTGCTTTGTCTACCCGGGCCAGCGCGAGACCTCCGTTGAGACCGTCCTCGACTCGTCGCGCTACTTCGTGCTCAAGATCGAGGACGGCACCGGGAAGCACGCCTTCATCGGGCTAGGGTTCGCGGAGCGGAACGAAGCGTTCGATTTCAACGTGGCGCTTTCGGACCACGAGAAGTACGTGAAGAGGGAGCACGAGAAGGAGAGCAACGGCGGCGAAACCAGCGACGAGGGCCACATCGATATTCATCCCGCCCTCAATCACAGATTGAAAGAAGGTGAGACGATAAGGATAAATGTGAAGCCGAAGCCGACGAGTGGGGCCGGGATGTTGTCCGCTGCCGGGCTATCCGGGACGGCAAAGGCAAAACCGATTAGTTTGGGGTTGGCTCCGCCACCCGGGTCCGGGAAAGTTAGGTCGGCTCTGCCACCACCTCCCAATGACCCTGTTGCTGCTAGAATCAGCTCTGGTGGTGTCAAGTCGCCGGATAACACAAGACGTGGATCCGACCCATTATCGGATCTTTCCCAGATTGAGAGGAATCTTCCCCCCACGACCGGATCAGGCTCGACAAAGACAAGTGCAGCAGGATGGGCGGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

275

Amino Acids

29.58

Weight (kDa)

6.02

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	10 - 174	6.5e-58	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	4 cut(s)	82, 246, 280, 344
AclWI	GGATC	7 cut(s)	175, 188, 201, 717, 730, 747, 787
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	9 cut(s)	190, 330, 536, 561, 617, 623, 624, 736, 776
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	70, 370, 490
AjiI	CACGTC	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	211, 684
AluI	AGCT	2 cut(s)	211, 684
Alw21I	GWGCWC	5 cut(s)	36, 89, 213, 294, 414
Alw26I	GTCTC	3 cut(s)	242, 254, 494
AlwI	GGATC	7 cut(s)	175, 188, 201, 717, 730, 747, 787
Ama87I	CYCGRG	2 cut(s)	235, 617
AoxI	GGCC	3 cut(s)	238, 451, 540
ApeKI	GCWGC	3 cut(s)	557, 671, 803
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	246, 282, 379
AspS9I	GGNCC	7 cut(s)	49, 169, 238, 385, 451, 540, 621
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	2 cut(s)	235, 617
AvaII	GGWCC	4 cut(s)	49, 169, 385, 621
BamHI	GGATCC	2 cut(s)	193, 722
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	3 cut(s)	44, 389, 413
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	5 cut(s)	36, 89, 213, 294, 414
BbvI	GCAGC	3 cut(s)	544, 658, 815
BccI	CCATC	1 cut(s)	804
BceAI	ACGGC	3 cut(s)	322, 445, 591
BciVI	GTATCC	1 cut(s)	92
BcoDI	GTCTC	3 cut(s)	242, 254, 494
BfaI	CTAG	2 cut(s)	335, 675
BfoI	RGCGCY	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	8 cut(s)	80, 109, 219, 433, 558, 672, 804, 816
BlsI	GCNGC	8 cut(s)	81, 110, 220, 434, 559, 673, 805, 817
Bme18I	GGWCC	4 cut(s)	49, 169, 385, 621
BmeT110I	CYCGRG	2 cut(s)	235, 617
BmgBI	CACGTC	1 cut(s)	719
BmgT120I	GGNCC	7 cut(s)	49, 169, 238, 385, 451, 540, 621
BmiI	GGNNCC	8 cut(s)	119, 149, 195, 310, 541, 609, 622, 724
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	3 cut(s)	104, 187, 209
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	2 cut(s)	242, 254
BsaJI	CCNNGG	3 cut(s)	80, 235, 617
BsaWI	WCCGGW	2 cut(s)	171, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	9 cut(s)	190, 330, 536, 561, 617, 623, 624, 736, 776
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	80, 235, 617
BseGI	GGATG	3 cut(s)	466, 552, 815
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	9 cut(s)	190, 330, 536, 561, 617, 623, 624, 736, 776
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	3 cut(s)	544, 658, 815
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	4 cut(s)	82, 246, 280, 344
Bsh1285I	CGRYCG	1 cut(s)	777
BshFI	GGCC	3 cut(s)	240, 453, 542
BshNI	GGYRCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	777
BsiHKAI	GWGCWC	5 cut(s)	36, 89, 213, 294, 414
BsiHKCI	CYCGRG	2 cut(s)	235, 617
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	9 cut(s)	190, 330, 536, 561, 617, 623, 624, 736, 776
BsmAI	GTCTC	3 cut(s)	242, 254, 494
BsmBI	CGTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	240, 453, 542
Bso31I	GGTCTC	2 cut(s)	242, 254
BsoBI	CYCGRG	2 cut(s)	235, 617
Bsp1286I	GDGCHC	5 cut(s)	36, 89, 213, 294, 414
Bsp143I	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
BspANI	GGCC	3 cut(s)	240, 453, 542
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	4 cut(s)	82, 246, 280, 344
BspLI	GGNNCC	8 cut(s)	119, 149, 195, 310, 541, 609, 622, 724
BspPI	GGATC	7 cut(s)	175, 188, 201, 717, 730, 747, 787
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	2 cut(s)	242, 254
BsrBI	CCGCTC	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	3 cut(s)	80, 235, 617
BssMI	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
BssSI	CACGAG	3 cut(s)	44, 389, 413
Bst2BI	CACGAG	3 cut(s)	44, 389, 413
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	218, 398
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	4 cut(s)	209, 223, 242, 321
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	466, 552, 815
BstFNI	CGCG	4 cut(s)	82, 246, 280, 344
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	3 cut(s)	246, 282, 379
BstKTI	GATC	7 cut(s)	135, 183, 196, 300, 725, 742, 782
BstMAI	GTCTC	3 cut(s)	242, 254, 494
BstMBI	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
BstMCI	CGRYCG	1 cut(s)	777
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 432, 441, 450, 812
BstUI	CGCG	4 cut(s)	82, 246, 280, 344
BstV1I	GCAGC	3 cut(s)	544, 658, 815
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	5 cut(s)	132, 180, 193, 722, 739
BstYI	RGATCY	5 cut(s)	132, 180, 193, 722, 739
Bsu15I	ATCGAT	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	240, 453, 542
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	80
BtrI	CACGTC	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	466, 552, 815
Cac8I	GCNNGC	4 cut(s)	209, 223, 242, 321
CfoI	GCGC	3 cut(s)	246, 282, 379
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	7 cut(s)	49, 169, 238, 385, 451, 540, 621
Cfr42I	CCGCGG	1 cut(s)	83
Cfr9I	CCCGGG	2 cut(s)	235, 617
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	171
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	7 cut(s)	134, 182, 195, 299, 724, 741, 781
DpnII	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
Eam1104I	CTCTTC	2 cut(s)	218, 398
EarI	CTCTTC	2 cut(s)	218, 398
EciI	GGCGGA	2 cut(s)	111, 600
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	2 cut(s)	242, 254
Eco47I	GGWCC	4 cut(s)	49, 169, 385, 621
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	2 cut(s)	235, 617
EcoICRI	GAGCTC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	494
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	586
FauI	CCCGC	2 cut(s)	84, 478
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	8 cut(s)	80, 109, 219, 433, 558, 672, 804, 816
FokI	GGATG	2 cut(s)	453, 559
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	8 cut(s)	80, 109, 219, 433, 558, 672, 804, 816
FspBI	CTAG	2 cut(s)	335, 675
GlaI	GCGC	3 cut(s)	245, 281, 378
GluI	GCNGC	8 cut(s)	80, 109, 219, 433, 558, 672, 804, 816
GsuI	CTGGAG	3 cut(s)	104, 187, 209
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	3 cut(s)	240, 453, 542
HhaI	GCGC	3 cut(s)	246, 282, 379
Hin6I	GCGC	3 cut(s)	244, 280, 377
HinP1I	GCGC	3 cut(s)	244, 280, 377
HinfI	GANTC	3 cut(s)	272, 678, 760
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	6 cut(s)	127, 198, 385, 727, 739, 824
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	3 cut(s)	280, 449, 535
HpyAV	CCTTC	3 cut(s)	334, 412, 488
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	3 cut(s)	372, 399, 718
HpyCH4V	TGCA	2 cut(s)	165, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 432, 441, 450, 812
HpySE526I	ACGT	3 cut(s)	372, 399, 718
HspAI	GCGC	3 cut(s)	244, 280, 377
KspI	CCGCGG	1 cut(s)	83
Kzo9I	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	6 cut(s)	84, 123, 153, 346, 409, 613
Lsp1109I	GCAGC	3 cut(s)	544, 658, 815
MaeI	CTAG	2 cut(s)	335, 675
MaeII	ACGT	3 cut(s)	372, 399, 718
MalI	GATC	7 cut(s)	134, 182, 195, 299, 724, 741, 781
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
MboII	GAAGA	4 cut(s)	58, 205, 415, 755
MflI	RGATCY	5 cut(s)	132, 180, 193, 722, 739
MhlI	GDGCHC	5 cut(s)	36, 89, 213, 294, 414
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	750
MspA1I	CMGCKG	2 cut(s)	82, 557
MvnI	CGCG	4 cut(s)	82, 246, 280, 344
MwoI	GCNNNNNNNGC	5 cut(s)	93, 432, 441, 450, 812
NdeII	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
NlaIV	GGNNCC	8 cut(s)	119, 149, 195, 310, 541, 609, 622, 724
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	3 cut(s)	360, 369, 396
PfeI	GAWTC	2 cut(s)	678, 760
PfoI	TCCNGGA	3 cut(s)	51, 569, 623
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	8 cut(s)	81, 110, 220, 434, 559, 673, 805, 817
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	213
PspN4I	GGNNCC	8 cut(s)	119, 149, 195, 310, 541, 609, 622, 724
PspPI	GGNCC	7 cut(s)	49, 169, 238, 385, 451, 540, 621
PsuI	RGATCY	5 cut(s)	132, 180, 193, 722, 739
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	213
SacII	CCGCGG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	218
SatI	GCNGC	8 cut(s)	80, 109, 219, 433, 558, 672, 804, 816
Sau3AI	GATC	7 cut(s)	132, 180, 193, 297, 722, 739, 779
Sau96I	GGNCC	7 cut(s)	49, 169, 238, 385, 451, 540, 621
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	5 cut(s)	36, 89, 213, 294, 414
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SinI	GGWCC	4 cut(s)	49, 169, 385, 621
SmaI	CCCGGG	2 cut(s)	237, 619
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SspMI	CTAG	2 cut(s)	335, 675
SstI	GAGCTC	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	3 cut(s)	375, 402, 721
TaqI	TCGA	6 cut(s)	30, 270, 300, 363, 459, 788
TauI	GCSGC	5 cut(s)	82, 111, 221, 435, 818
TfiI	GAWTC	2 cut(s)	678, 760
TseI	GCWGC	3 cut(s)	557, 671, 803
TspDTI	ATGAA	2 cut(s)	316, 455
TspGWI	ACGGA	1 cut(s)	244
TspMI	CCCGGG	2 cut(s)	235, 617
VpaK11BI	GGWCC	4 cut(s)	49, 169, 385, 621
XmaI	CCCGGG	2 cut(s)	235, 617
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	335, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.