Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

1155364 .. 1161032

Gene Structure 5669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGGTTTAACTCGGGTGTGAAGATTTTACCTTTATCCAAATGGTCCATGAGGTCTTGGTCTATAAAATTCCACCATGGTCAACGTCGGGTGGTTACAAGTCCGGTGAGTGGCTCCGGTCGACAGATATGGTCGGGAAGATCGCGTGTTGTGTCGTGCAAGGAACGGTGTGAGATCCGATTGGAGGATCCAAGCTCCAGTGAGCTCTTTGCAGCTTGCTTTGTTTTAACCAGGCCGTTGCGAGACCTCGGTGGAGATGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

88

Amino Acids

9.89

Weight (kDa)

10.78

Isoelectric Point (pI)

62.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	40 - 75	8.8e-08	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	121
AccII	CGCG	1 cut(s)	145
AclWI	GGATC	3 cut(s)	169, 182, 195
AcsI	RAATTY	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	110, 184
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	195, 205, 215
AluI	AGCT	3 cut(s)	195, 205, 215
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	3 cut(s)	169, 182, 195
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	115, 189
BmrFI	CCNGG	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	76, 247
BsaWI	WCCGGW	2 cut(s)	103, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 184
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	76, 247
BseLI	CCNNNNNNNGG	2 cut(s)	110, 184
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	104, 117
BslI	CCNNNNNNNGG	2 cut(s)	110, 184
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	140, 174, 187
Bsp19I	CCATGG	1 cut(s)	76
BspANI	GGCC	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	115, 189
BspPI	GGATC	3 cut(s)	169, 182, 195
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	76, 247
BssMI	GATC	3 cut(s)	140, 174, 187
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	3 cut(s)	143, 177, 190
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	140, 174, 187
BstMCI	CGRYCG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	174, 187
BstYI	RGATCY	2 cut(s)	174, 187
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	45
CviAII	CATG	2 cut(s)	49, 77
CviJI	RGCY	5 cut(s)	114, 195, 205, 215, 235
CviKI_1	RGCY	5 cut(s)	114, 195, 205, 215, 235
DpnI	GATC	3 cut(s)	142, 176, 189
DpnII	GATC	3 cut(s)	140, 174, 187
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	52, 80
FaiI	YATR	4 cut(s)	50, 65, 78, 130
FatI	CATG	2 cut(s)	48, 76
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	104, 117
Hin1II	CATG	2 cut(s)	52, 80
HincII	GTYRAC	2 cut(s)	83, 122
HindII	GTYRAC	2 cut(s)	83, 122
HpaII	CCGG	2 cut(s)	104, 117
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	83, 122
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	83, 122
Hpy99I	CGWCG	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	159, 212
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	52, 80
Kzo9I	GATC	3 cut(s)	140, 174, 187
LmnI	GCTCC	2 cut(s)	119, 200
LpnPI	CCDG	5 cut(s)	117, 130, 211, 217, 244
Lsp1109I	GCAGC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	142, 176, 189
MboI	GATC	3 cut(s)	140, 174, 187
MboII	GAAGA	2 cut(s)	34, 150
MflI	RGATCY	2 cut(s)	174, 187
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	3 cut(s)	45, 178, 257
MseI	TTAA	2 cut(s)	9, 227
MspI	CCGG	2 cut(s)	104, 117
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	140, 174, 187
NlaIII	CATG	2 cut(s)	52, 80
NlaIV	GGNNCC	2 cut(s)	115, 189
PkrI	GCNGC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	115, 189
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	174, 187
SacI	GAGCTC	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	9, 227
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	3 cut(s)	140, 174, 187
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	8, 34, 56, 88, 197, 207, 217, 249
SinI	GGWCC	1 cut(s)	45
Sse9I	AATT	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	9, 227
Tru9I	TTAA	2 cut(s)	9, 227
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	212
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.