Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003335.1

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

13157 .. 14491

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003335.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgtcgtttgaggacgaggaggagtcgttcgagcacacgctgctggtggtgcgcgaggtcgccgtctacaaaatcccgccgcggtcgacgtccggcgggtacaagtgcggcgagtggctccagtccgacaagatctggacgggtcgcctccgggtcgtgtcctgcaaggaccgctgcgagatccggctcgaggatcccaactccagcgagctcttcgccgcctgcttcgtcccgccggggcagcgcgagacctccgtcgagaccgtcctcgactcctcccgctacttcgtcctcaagatcgaggacggcgccggcaagcacgccttcatcggcctcgggttcgccgagcgcaacgaggccttcgatttcaacgtcgcgctctccgatcacgacaagtacgtcaagcgagagactgataatgacgtcggcggcggcggcggcgacgacgacagtcacattgaggttcacccggcggtgaatcacagattgaaggaaggtgagacgataaggataaatgtgaagccgaagccgacgagtgggaccgggatgctgtcagcagctgggctatccgggtcggcaaagcccaaatcgccggctttaagcctggccccgccacccgggtccgggaaactcaggtcacctctgccgccgcctccaaatgatcctgttgctgctaggatcagctctggtggtgtcaaacctccacaggatagtgcaagaaagagctccgacccgttatcggatctttcgccaattgagaggaatctgcctccagcaaatggatcaggatcatccacaaagacaaatgcagtaggatgggcagctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

276

Amino Acids

29.55

Weight (kDa)

5.76

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AatII	GACGTC	2 cut(s)	92, 426
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	779
AccI	GTMKAC	2 cut(s)	66, 86
AccII	CGCG	4 cut(s)	54, 82, 246, 377
AclWI	GGATC	8 cut(s)	175, 188, 201, 656, 686, 750, 790, 796
AcyI	GRCGYC	3 cut(s)	89, 309, 423
AfaI	GTAC	2 cut(s)	101, 398
AfiI	CCNNNNNNNGG	7 cut(s)	190, 536, 617, 623, 624, 739, 779
AgsI	TTSAA	2 cut(s)	370, 490
AjnI	CCWGG	1 cut(s)	603
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	5 cut(s)	211, 560, 684, 726, 824
AluI	AGCT	5 cut(s)	211, 560, 684, 726, 824
Alw21I	GWGCWC	3 cut(s)	36, 213, 728
Alw26I	GTCTC	4 cut(s)	242, 254, 404, 494
AlwI	GGATC	8 cut(s)	175, 188, 201, 656, 686, 750, 790, 796
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	3 cut(s)	188, 335, 617
AoxI	GGCC	3 cut(s)	331, 357, 606
ApeKI	GCWGC	6 cut(s)	40, 174, 241, 557, 671, 821
AspLEI	GCGC	5 cut(s)	54, 246, 311, 351, 379
AspS9I	GGNCC	4 cut(s)	169, 540, 607, 621
AsuC2I	CCSGG	8 cut(s)	152, 237, 470, 544, 571, 618, 619, 625
AsuHPI	GGTGA	4 cut(s)	458, 487, 509, 630
AvaI	CYCGRG	3 cut(s)	188, 335, 617
AvaII	GGWCC	3 cut(s)	169, 540, 621
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	213, 728
Bbv12I	GWGCWC	3 cut(s)	36, 213, 728
BbvI	GCAGC	5 cut(s)	27, 161, 253, 569, 658
BccI	CCATC	1 cut(s)	810
BceAI	ACGGC	2 cut(s)	47, 322
BciT130I	CCWGG	1 cut(s)	605
BcnI	CCSGG	8 cut(s)	152, 237, 470, 544, 571, 618, 619, 625
BcoDI	GTCTC	4 cut(s)	242, 254, 404, 494
BfaI	CTAG	1 cut(s)	675
BfoI	RGCGCY	1 cut(s)	312
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	9 cut(s)	152, 237, 470, 544, 571, 605, 618, 619, 625
Bme18I	GGWCC	3 cut(s)	169, 540, 621
BmeT110I	CYCGRG	3 cut(s)	188, 335, 617
BmgT120I	GGNCC	4 cut(s)	169, 540, 607, 621
BmiI	GGNNCC	6 cut(s)	119, 195, 310, 541, 609, 622
BmrFI	CCNGG	9 cut(s)	152, 237, 470, 544, 571, 605, 618, 619, 625
BmsI	GCATC	1 cut(s)	537
BoxI	GACNNNNGTC	2 cut(s)	254, 450
BpmI	CTGGAG	3 cut(s)	104, 187, 756
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	8 cut(s)	152, 237, 470, 544, 571, 618, 619, 625
BsaBI	GATNNNNATC	1 cut(s)	787
BsaHI	GRCGYC	3 cut(s)	89, 309, 423
BsaI	GGTCTC	2 cut(s)	242, 254
BsaJI	CCNNGG	4 cut(s)	80, 236, 334, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	7 cut(s)	190, 536, 617, 623, 624, 739, 779
Bse118I	RCCGGY	2 cut(s)	311, 592
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	4 cut(s)	80, 236, 334, 617
BseGI	GGATG	3 cut(s)	552, 791, 821
BseJI	GATNNNNATC	1 cut(s)	787
BseLI	CCNNNNNNNGG	7 cut(s)	190, 536, 617, 623, 624, 739, 779
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	3 cut(s)	32, 35, 265
BseXI	GCAGC	5 cut(s)	27, 161, 253, 569, 658
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	4 cut(s)	54, 82, 246, 377
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	333, 359, 608
BshNI	GGYRCC	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	3 cut(s)	36, 213, 728
BsiHKCI	CYCGRG	3 cut(s)	188, 335, 617
BslFI	GGGAC	2 cut(s)	215, 553
BslI	CCNNNNNNNGG	7 cut(s)	190, 536, 617, 623, 624, 739, 779
BsmAI	GTCTC	4 cut(s)	242, 254, 404, 494
BsmBI	CGTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	215, 553
BsnI	GGCC	3 cut(s)	333, 359, 608
Bso31I	GGTCTC	2 cut(s)	242, 254
BsoBI	CYCGRG	3 cut(s)	188, 335, 617
Bsp1286I	GDGCHC	3 cut(s)	36, 213, 728
BspANI	GGCC	3 cut(s)	333, 359, 608
BspCNI	CTCAG	1 cut(s)	645
BspFNI	CGCG	4 cut(s)	54, 82, 246, 377
BspLI	GGNNCC	6 cut(s)	119, 195, 310, 541, 609, 622
BspPI	GGATC	8 cut(s)	175, 188, 201, 656, 686, 750, 790, 796
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	2 cut(s)	242, 254
BsrFI	RCCGGY	2 cut(s)	311, 592
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	2 cut(s)	311, 592
BssECI	CCNNGG	4 cut(s)	80, 236, 334, 617
BssNI	GRCGYC	3 cut(s)	89, 309, 423
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	2 cut(s)	265, 452
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	3 cut(s)	89, 309, 423
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstC8I	GCNNGC	6 cut(s)	209, 223, 313, 317, 321, 594
BstDEI	CTNAG	1 cut(s)	632
BstDSI	CCRYGG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	552, 791, 821
BstFNI	CGCG	4 cut(s)	54, 82, 246, 377
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	5 cut(s)	54, 246, 311, 351, 379
BstMAI	GTCTC	4 cut(s)	242, 254, 404, 494
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 49, 171, 241, 435, 438, 589
BstNI	CCWGG	1 cut(s)	605
BstPAI	GACNNNNGTC	2 cut(s)	254, 450
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	9 cut(s)	150, 235, 468, 542, 569, 603, 616, 617, 623
BstUI	CGCG	4 cut(s)	54, 82, 246, 377
BstV1I	GCAGC	5 cut(s)	27, 161, 253, 569, 658
BstX2I	RGATCY	4 cut(s)	132, 180, 193, 742
BstYI	RGATCY	4 cut(s)	132, 180, 193, 742
BsuRI	GGCC	3 cut(s)	333, 359, 608
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	552, 791, 821
Cac8I	GCNNGC	6 cut(s)	209, 223, 313, 317, 321, 594
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	5 cut(s)	54, 246, 311, 351, 379
Cfr10I	RCCGGY	2 cut(s)	311, 592
Cfr13I	GGNCC	4 cut(s)	169, 540, 607, 621
Cfr42I	CCGCGG	1 cut(s)	83
Cfr9I	CCCGGG	1 cut(s)	617
Csp6I	GTAC	2 cut(s)	100, 397
CviQI	GTAC	2 cut(s)	100, 397
DdeI	CTNAG	1 cut(s)	632
DinI	GGCGCC	1 cut(s)	310
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	2 cut(s)	211, 726
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	213, 728
Eco31I	GGTCTC	2 cut(s)	242, 254
Eco47I	GGWCC	3 cut(s)	169, 540, 621
Eco53kI	GAGCTC	2 cut(s)	211, 726
Eco88I	CYCGRG	3 cut(s)	188, 335, 617
Eco91I	GGTNACC	1 cut(s)	636
EcoICRI	GAGCTC	2 cut(s)	211, 726
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	603
EcoT38I	GRGCYC	2 cut(s)	213, 728
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	494
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	215, 553
FauI	CCCGC	5 cut(s)	84, 89, 240, 287, 618
FblI	GTMKAC	2 cut(s)	66, 86
FokI	GGATG	2 cut(s)	559, 778
FriOI	GRGCYC	2 cut(s)	213, 728
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	5 cut(s)	53, 245, 310, 350, 378
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	3 cut(s)	104, 187, 756
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	333, 359, 608
HhaI	GCGC	5 cut(s)	54, 246, 311, 351, 379
Hin1I	GRCGYC	3 cut(s)	89, 309, 423
Hin6I	GCGC	5 cut(s)	52, 244, 309, 349, 377
HinP1I	GCGC	5 cut(s)	52, 244, 309, 349, 377
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	23, 272, 478, 763
HphI	GGTGA	4 cut(s)	458, 487, 509, 630
Hpy166II	GTNNAC	3 cut(s)	67, 87, 466
Hpy188I	TCNGA	5 cut(s)	127, 385, 730, 742, 830
Hpy188III	TCNNGA	5 cut(s)	136, 259, 295, 389, 786
Hpy8I	GTNNAC	3 cut(s)	67, 87, 466
Hpy99I	CGWCG	7 cut(s)	91, 260, 377, 428, 446, 449, 535
HpyAV	CCTTC	4 cut(s)	334, 370, 484, 488
HpyCH4III	ACNGT	2 cut(s)	265, 452
HpyCH4IV	ACGT	4 cut(s)	89, 372, 399, 423
HpyCH4V	TGCA	3 cut(s)	165, 716, 809
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 49, 171, 241, 435, 438, 589
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	4 cut(s)	89, 372, 399, 423
Hsp92I	GRCGYC	3 cut(s)	89, 309, 423
HspAI	GCGC	5 cut(s)	52, 244, 309, 349, 377
KasI	GGCGCC	1 cut(s)	308
KroI	GCCGGC	2 cut(s)	311, 592
KroNI	GCCGGC	2 cut(s)	313, 594
KspI	CCGCGG	1 cut(s)	83
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	123, 731
Lsp1109I	GCAGC	5 cut(s)	27, 161, 253, 569, 658
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	4 cut(s)	89, 372, 399, 423
MaeIII	GTNAC	2 cut(s)	452, 636
MboII	GAAGA	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	4 cut(s)	132, 180, 193, 742
MhlI	GDGCHC	3 cut(s)	36, 213, 728
MluCI	AATT	1 cut(s)	753
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	32, 266
MmeI	TCCRAC	2 cut(s)	150, 753
MroNI	GCCGGC	2 cut(s)	311, 592
MseI	TTAA	1 cut(s)	599
MspA1I	CMGCKG	3 cut(s)	82, 174, 560
MspR9I	CCNGG	9 cut(s)	152, 237, 470, 544, 571, 605, 618, 619, 625
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	4 cut(s)	54, 82, 246, 377
MwoI	GCNNNNNNNGC	7 cut(s)	40, 49, 171, 241, 435, 438, 589
NaeI	GCCGGC	2 cut(s)	313, 594
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	8 cut(s)	152, 237, 470, 544, 571, 618, 619, 625
NgoMIV	GCCGGC	2 cut(s)	311, 592
NlaIV	GGNNCC	6 cut(s)	119, 195, 310, 541, 609, 622
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	452, 636
PaeR7I	CTCGAG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	5 cut(s)	342, 360, 369, 381, 396
PdiI	GCCGGC	2 cut(s)	313, 594
PfeI	GAWTC	2 cut(s)	478, 763
PflMI	CCANNNNNTGG	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	623
PleI	GAGTC	2 cut(s)	31, 266
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	31, 266
PshAI	GACNNNNGTC	2 cut(s)	254, 450
Psp124BI	GAGCTC	2 cut(s)	213, 728
Psp6I	CCWGG	1 cut(s)	603
PspEI	GGTNACC	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	6 cut(s)	119, 195, 310, 541, 609, 622
PspPI	GGNCC	4 cut(s)	169, 540, 607, 621
PspXI	VCTCGAGB	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	4 cut(s)	132, 180, 193, 742
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	101, 398
RsaNI	GTAC	2 cut(s)	100, 397
SacI	GAGCTC	2 cut(s)	213, 728
SacII	CCGCGG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	599
Sau96I	GGNCC	4 cut(s)	169, 540, 607, 621
SchI	GAGTC	2 cut(s)	32, 266
ScrFI	CCNGG	9 cut(s)	152, 237, 470, 544, 571, 605, 618, 619, 625
SduI	GDGCHC	3 cut(s)	36, 213, 728
SfaNI	GCATC	1 cut(s)	537
SfoI	GGCGCC	1 cut(s)	310
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SinI	GGWCC	3 cut(s)	169, 540, 621
SlaI	CTCGAG	1 cut(s)	188
SmaI	CCCGGG	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	188, 293
SmoI	CTYRAG	2 cut(s)	188, 293
Sse9I	AATT	1 cut(s)	753
SseBI	AGGCCT	1 cut(s)	359
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	2 cut(s)	213, 728
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	9 cut(s)	150, 235, 468, 542, 569, 603, 616, 617, 623
TaaI	ACNGT	2 cut(s)	265, 452
TaiI	ACGT	4 cut(s)	92, 375, 402, 426
TaqI	TCGA	7 cut(s)	30, 86, 189, 258, 270, 300, 363
TasI	AATT	1 cut(s)	753
TauI	GCSGC	9 cut(s)	82, 111, 221, 432, 435, 438, 441, 649, 652
TfiI	GAWTC	2 cut(s)	478, 763
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TseFI	GTSAC	2 cut(s)	452, 636
TseI	GCWGC	6 cut(s)	40, 174, 241, 557, 671, 821
Tsp45I	GTSAC	2 cut(s)	452, 636
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	244
TspMI	CCCGGG	1 cut(s)	617
Van91I	CCANNNNNTGG	1 cut(s)	779
VpaK11BI	GGWCC	3 cut(s)	169, 540, 621
XhoI	CTCGAG	1 cut(s)	188
XmaI	CCCGGG	1 cut(s)	617
XmiI	GTMKAC	2 cut(s)	66, 86
XspI	CTAG	1 cut(s)	675
ZraI	GACGTC	2 cut(s)	90, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.