Rh2AG234900

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003015
Physical Location & Seq
Forward (+)
25312522 .. 25312701
180 bp
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UTR
Exon/CDS
Intron
Rh2AG234900.1

Sequence Viewer

Length: 180 bp
ATGATCCGAACTCCAGCAACCTTCATCGAGACCGTGTTCAACTCATCGAGCTACTTCGTCCTTAAGATTGAGGACGGCACCGGTAAGCACGTCTTCATTGGCCTCGGGTTTTCCGAGCGCAATGAGGCGTTCTATTTCAACGTCACGCTCTCCGATCATGACGAGTACGTCAAGAGATGA

Protein Analysis

59

Amino Acids

6.83

Weight (kDa)

5.5

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 5 - 58 4.3e-17 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 77
AfaI GTAC 1 cut(s) 167
AflII CTTAAG 1 cut(s) 62
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 2 cut(s) 40, 139
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 80
AspLEI GCGC 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 104
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 23
BfrI CTTAAG 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 127
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 2 cut(s) 3, 154
BspANI GGCC 1 cut(s) 102
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 3, 154
Bst4CI ACNGT 1 cut(s) 34
BstAFI CTTAAG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 6, 157
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 3, 154
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 102
BtrI CACGTC 1 cut(s) 91
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 80
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 51, 102
CviKI_1 RGCY 2 cut(s) 51, 102
CviQI GTAC 1 cut(s) 166
DpnI GATC 2 cut(s) 5, 156
DpnII GATC 2 cut(s) 3, 154
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 104
FaeI CATG 1 cut(s) 161
FaiI YATR 1 cut(s) 159
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 1 cut(s) 157
GlaI GCGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 8, 115, 154
Hpy188III TCNNGA 3 cut(s) 28, 158, 172
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 3 cut(s) 90, 141, 168
HpySE526I ACGT 3 cut(s) 90, 141, 168
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 3, 154
LpnPI CCDG 2 cut(s) 27, 94
MaeII ACGT 3 cut(s) 90, 141, 168
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 5, 156
MboI GATC 2 cut(s) 3, 154
MboII GAAGA 1 cut(s) 85
MnlI CCTC 3 cut(s) 64, 113, 118
MseI TTAA 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 81
NdeII GATC 2 cut(s) 3, 154
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 142
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PinAI ACCGGT 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 2 cut(s) 3, 154
SetI ASST 5 cut(s) 23, 53, 93, 144, 171
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 3 cut(s) 93, 144, 171
TaqI TCGA 2 cut(s) 27, 47
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 13, 85
Vha464I CTTAAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.