Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

17643598 .. 17645609

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21210.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCGTTTGAGGACGAGGAGGAGTCGTTCGAGCACACGCTGCTGGTGGTGCGCGAGGTCTCCGTCTACAAAATCCCGCCGCGCTCGACGTCCGGCGGGTACAAGTGCGGCGAGTGGCTCCAGTCCGACAAGATCTGGACCGGCCGGCTCCGGGTCGTGTCCTGCAAGGACCGGTGCGAGATCCGGTTGGAGGATCCGAACTCCGGCGAGCTCTTCGCCGCCTGCTTCGTCCCGCCGGGCCAGCGCGAGACCTCCGTCGAGACCGTCCTCGACTCTTCGCGCTACTTCGTCCTCAAGATCGAGGACGGCACCGGAAAACACGCCTTCATCGGGCTCGGGTTCGCCGAGCGCAACGAGGCGTTTGATTTCAACGTCGCGCTCTCCGATCACGATAAGTACGTGAAAAGAGAGAGTGATAATGACGCCGCCGGCAGCACCGCCGGCGGCGACGACAGTCACATTGAGGTTGACCCGGTGGTGAATCATAGATTGAAGGAAGGTGAGACGATAAGGATAAATGTGAAGCCGAAGCCGACGAGTGGGACCGGGATGTTGTCGGCAGCTGGGCTATCCGGGGCGGCAAAGCCCAAATCACCGGCTTTGAGCCTGGCCCCGCCGCCCGGGTCCGGGAAGCCCAGGTCACCTCTGCCACCGCCACCAAATGATCCTGTTGCTGCTAGGATCAACTCTGGTGGTGTCAAACAGGATAATGTATCAAGAAAGAAATCCGACCCGTTATCGGATCTTTCTCAAATTGAGAGGAATCTGCCTCCAACAACTGGATCAGGATCATCCACAAAGACAAATGCGGTAGGATGGGCAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

277

Amino Acids

29.66

Weight (kDa)

5.82

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	10 - 143	1.2e-53	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	5 cut(s)	54, 82, 246, 280, 377
AclWI	GGATC	8 cut(s)	175, 188, 201, 659, 689, 750, 790, 796
AcoI	YGGCCR	1 cut(s)	142
AcyI	GRCGYC	2 cut(s)	89, 423
AfaI	GTAC	2 cut(s)	101, 398
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	370, 493
AjnI	CCWGG	2 cut(s)	606, 635
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	211, 563
AluI	AGCT	2 cut(s)	211, 563
Alw21I	GWGCWC	2 cut(s)	36, 213
Alw26I	GTCTC	4 cut(s)	64, 242, 254, 497
AlwI	GGATC	8 cut(s)	175, 188, 201, 659, 689, 750, 790, 796
Ama87I	CYCGRG	2 cut(s)	335, 620
AoxI	GGCC	3 cut(s)	142, 238, 609
ApeKI	GCWGC	5 cut(s)	40, 432, 560, 674, 821
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	6 cut(s)	54, 84, 246, 282, 351, 379
AspS9I	GGNCC	6 cut(s)	138, 169, 238, 543, 610, 624
AsuC2I	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
AsuHPI	GGTGA	4 cut(s)	490, 512, 585, 633
AvaI	CYCGRG	2 cut(s)	335, 620
AvaII	GGWCC	4 cut(s)	138, 169, 543, 624
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	213, 336
Bbv12I	GWGCWC	2 cut(s)	36, 213
BbvI	GCAGC	4 cut(s)	27, 444, 572, 661
BccI	CCATC	1 cut(s)	810
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	608, 637
BcnI	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
BcoDI	GTCTC	4 cut(s)	64, 242, 254, 497
BfaI	CTAG	1 cut(s)	678
BglII	AGATCT	1 cut(s)	132
Bme18I	GGWCC	4 cut(s)	138, 169, 543, 624
BmeT110I	CYCGRG	2 cut(s)	335, 620
BmgT120I	GGNCC	6 cut(s)	138, 169, 238, 543, 610, 624
BmiI	GGNNCC	7 cut(s)	119, 149, 195, 310, 544, 612, 625
BoxI	GACNNNNGTC	2 cut(s)	254, 453
BpmI	CTGGAG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	787
BsaHI	GRCGYC	2 cut(s)	89, 423
BsaI	GGTCTC	3 cut(s)	64, 242, 254
BsaJI	CCNNGG	3 cut(s)	573, 620, 635
BsaWI	WCCGGW	3 cut(s)	171, 183, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bse118I	RCCGGY	6 cut(s)	140, 144, 171, 428, 440, 595
Bse1I	ACTGG	2 cut(s)	121, 784
Bse8I	GATNNNNATC	1 cut(s)	787
BseBI	CCWGG	2 cut(s)	608, 637
BseDI	CCNNGG	3 cut(s)	573, 620, 635
BseGI	GGATG	3 cut(s)	555, 791, 821
BseJI	GATNNNNATC	1 cut(s)	787
BseNI	ACTGG	2 cut(s)	121, 784
BseRI	GAGGAG	2 cut(s)	32, 35
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	27, 444, 572, 661
BseYI	CCCAGC	1 cut(s)	563
Bsh1236I	CGCG	5 cut(s)	54, 82, 246, 280, 377
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	144, 240, 611
BshNI	GGYRCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	36, 213
BsiHKCI	CYCGRG	2 cut(s)	335, 620
BslFI	GGGAC	2 cut(s)	215, 556
BsmAI	GTCTC	4 cut(s)	64, 242, 254, 497
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	215, 556
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	3 cut(s)	144, 240, 611
Bso31I	GGTCTC	3 cut(s)	64, 242, 254
BsoBI	CYCGRG	2 cut(s)	335, 620
Bsp1286I	GDGCHC	3 cut(s)	36, 213, 336
BspANI	GGCC	3 cut(s)	144, 240, 611
BspFNI	CGCG	5 cut(s)	54, 82, 246, 280, 377
BspLI	GGNNCC	7 cut(s)	119, 149, 195, 310, 544, 612, 625
BspPI	GGATC	8 cut(s)	175, 188, 201, 659, 689, 750, 790, 796
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	3 cut(s)	64, 242, 254
BsrFI	RCCGGY	6 cut(s)	140, 144, 171, 428, 440, 595
BsrI	ACTGG	2 cut(s)	121, 784
BssAI	RCCGGY	6 cut(s)	140, 144, 171, 428, 440, 595
BssECI	CCNNGG	3 cut(s)	573, 620, 635
BssNI	GRCGYC	2 cut(s)	89, 423
Bst2UI	CCWGG	2 cut(s)	608, 637
Bst4CI	ACNGT	2 cut(s)	265, 455
Bst6I	CTCTTC	2 cut(s)	218, 280
BstACI	GRCGYC	2 cut(s)	89, 423
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	6 cut(s)	146, 209, 223, 242, 430, 442
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	555, 791, 821
BstFNI	CGCG	5 cut(s)	54, 82, 246, 280, 377
BstHHI	GCGC	6 cut(s)	54, 84, 246, 282, 351, 379
BstMAI	GTCTC	4 cut(s)	64, 242, 254, 497
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 49, 241, 441
BstNI	CCWGG	2 cut(s)	608, 637
BstPAI	GACNNNNGTC	2 cut(s)	254, 453
BstPI	GGTNACC	1 cut(s)	639
BstUI	CGCG	5 cut(s)	54, 82, 246, 280, 377
BstV1I	GCAGC	4 cut(s)	27, 444, 572, 661
BstX2I	RGATCY	4 cut(s)	132, 180, 193, 742
BstYI	RGATCY	4 cut(s)	132, 180, 193, 742
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	144, 240, 611
BtsCI	GGATG	3 cut(s)	555, 791, 821
Cac8I	GCNNGC	6 cut(s)	146, 209, 223, 242, 430, 442
CfoI	GCGC	6 cut(s)	54, 84, 246, 282, 351, 379
Cfr10I	RCCGGY	6 cut(s)	140, 144, 171, 428, 440, 595
Cfr13I	GGNCC	6 cut(s)	138, 169, 238, 543, 610, 624
Cfr9I	CCCGGG	1 cut(s)	620
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	100, 397
CspAI	ACCGGT	1 cut(s)	171
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviQI	GTAC	2 cut(s)	100, 397
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	218, 280
EarI	CTCTTC	2 cut(s)	218, 280
Ecl136II	GAGCTC	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	213, 336
Eco31I	GGTCTC	3 cut(s)	64, 242, 254
Eco47I	GGWCC	4 cut(s)	138, 169, 543, 624
Eco52I	CGGCCG	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	2 cut(s)	335, 620
Eco91I	GGTNACC	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	606, 635
EcoT38I	GRGCYC	2 cut(s)	213, 336
Esp3I	CGTCTC	1 cut(s)	497
FaiI	YATR	1 cut(s)	486
FaqI	GGGAC	2 cut(s)	215, 556
FauI	CCCGC	4 cut(s)	84, 89, 240, 621
FblI	GTMKAC	1 cut(s)	66
FokI	GGATG	2 cut(s)	562, 778
FriOI	GRGCYC	2 cut(s)	213, 336
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	6 cut(s)	53, 83, 245, 281, 350, 378
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	144, 240, 611
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	6 cut(s)	54, 84, 246, 282, 351, 379
Hin1I	GRCGYC	2 cut(s)	89, 423
Hin6I	GCGC	6 cut(s)	52, 82, 244, 280, 349, 377
HinP1I	GCGC	6 cut(s)	52, 82, 244, 280, 349, 377
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	4 cut(s)	23, 272, 481, 763
HphI	GGTGA	4 cut(s)	490, 512, 585, 633
Hpy166II	GTNNAC	2 cut(s)	67, 469
Hpy188I	TCNGA	6 cut(s)	127, 198, 385, 730, 742, 830
Hpy188III	TCNNGA	6 cut(s)	136, 259, 295, 389, 717, 786
Hpy8I	GTNNAC	2 cut(s)	67, 469
Hpy99I	CGWCG	5 cut(s)	91, 260, 377, 452, 538
HpyAV	CCTTC	3 cut(s)	334, 487, 491
HpyCH4III	ACNGT	2 cut(s)	265, 455
HpyCH4IV	ACGT	3 cut(s)	89, 372, 399
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 49, 241, 441
HpySE526I	ACGT	3 cut(s)	89, 372, 399
Hsp92I	GRCGYC	2 cut(s)	89, 423
HspAI	GCGC	6 cut(s)	52, 82, 244, 280, 349, 377
KroI	GCCGGC	3 cut(s)	144, 428, 440
KroNI	GCCGGC	3 cut(s)	146, 430, 442
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	123, 153
Lsp1109I	GCAGC	4 cut(s)	27, 444, 572, 661
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	3 cut(s)	89, 372, 399
MaeIII	GTNAC	2 cut(s)	455, 639
MboII	GAAGA	2 cut(s)	205, 267
MflI	RGATCY	4 cut(s)	132, 180, 193, 742
MhlI	GDGCHC	3 cut(s)	36, 213, 336
MluCI	AATT	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	32, 266
MmeI	TCCRAC	4 cut(s)	150, 168, 753, 797
MreI	CGCCGGCG	1 cut(s)	440
MroNI	GCCGGC	3 cut(s)	144, 428, 440
MspA1I	CMGCKG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	608, 637
MvnI	CGCG	5 cut(s)	54, 82, 246, 280, 377
MwoI	GCNNNNNNNGC	4 cut(s)	40, 49, 241, 441
NaeI	GCCGGC	3 cut(s)	146, 430, 442
NciI	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
NgoMIV	GCCGGC	3 cut(s)	144, 428, 440
NlaIV	GGNNCC	7 cut(s)	119, 149, 195, 310, 544, 612, 625
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	455, 639
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	3 cut(s)	342, 381, 396
PctI	GAATGC	1 cut(s)	824
PdiI	GCCGGC	3 cut(s)	146, 430, 442
PfeI	GAWTC	2 cut(s)	481, 763
PflMI	CCANNNNNTGG	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	626
PinAI	ACCGGT	1 cut(s)	171
PleI	GAGTC	2 cut(s)	31, 266
PpsI	GAGTC	2 cut(s)	31, 266
Ppu21I	YACGTR	1 cut(s)	400
PshAI	GACNNNNGTC	2 cut(s)	254, 453
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	606, 635
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	2 cut(s)	606, 635
PspN4I	GGNNCC	7 cut(s)	119, 149, 195, 310, 544, 612, 625
PspPI	GGNCC	6 cut(s)	138, 169, 238, 543, 610, 624
PsuI	RGATCY	4 cut(s)	132, 180, 193, 742
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	101, 398
RsaNI	GTAC	2 cut(s)	100, 397
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	218
Sau96I	GGNCC	6 cut(s)	138, 169, 238, 543, 610, 624
SchI	GAGTC	2 cut(s)	32, 266
SduI	GDGCHC	3 cut(s)	36, 213, 336
SgrAI	CRCCGGYG	1 cut(s)	440
SinI	GGWCC	4 cut(s)	138, 169, 543, 624
SmaI	CCCGGG	1 cut(s)	622
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	753
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	265, 455
TaiI	ACGT	3 cut(s)	92, 375, 402
TaqI	TCGA	5 cut(s)	30, 86, 258, 270, 300
TasI	AATT	1 cut(s)	753
TauI	GCSGC	7 cut(s)	82, 111, 221, 428, 447, 581, 619
TfiI	GAWTC	2 cut(s)	481, 763
TseFI	GTSAC	2 cut(s)	455, 639
TseI	GCWGC	5 cut(s)	40, 432, 560, 674, 821
Tsp45I	GTSAC	2 cut(s)	455, 639
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	2 cut(s)	52, 244
TspMI	CCCGGG	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	779
VpaK11BI	GGWCC	4 cut(s)	138, 169, 543, 624
XmaI	CCCGGG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.