Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Forward (+)

85534 .. 86871

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003877.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgtcgtttgaggacgaggaggagtcgttcgagcacacgctgctggtggtgcgcgaggtcgccgtctacaaaatcccgccgcggtcgacgtccggcgggtacaagtgcggcgagtggctccagtccgacaagatctggacgggtcgcctccgggtcgtgtcctgcaaggaccgctgcgagatccggctcgaggatcccaactccagcgagctcttcgccgcctgcttcgtcccgccggggcagcgcgagacctccgtcgagaccgtcctcgactcctcccgctacttcgtcctcaagatcgaggacggcgccggcaagcacgccttcatcggcctcgggttcgccgagcgcaacgaggccttcgatttcaacgtcgcgctctccgatcacgacaagtacgtcaagcgagagactgataatgacgtcggcggcggcggcggcggcgacgacgacagtcacattgaggttcacccggcggtgaatcacagattgaaggaaggtgagacgataaggataaatgtgaagccgaagccgacgagtgggaccgggatgctgtcagcagctgggctatccgggtcggcaaagcccaaatcgccggctttaagcctggccccgccacccgggtccgggaaactcaggtcacctctgccgccgcctccaaatgatcctgttgctgctaggatcagctctggtggtgtcaaacctccacaggatagtgcaagaaagagctccgacccgttatcggatctttcgccaattgagaggaatctgcctccagcaaatggatcaggatcatccacaaagacaaatgcagtaggatgggcagctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

277

Amino Acids

29.61

Weight (kDa)

5.76

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AatII	GACGTC	2 cut(s)	92, 426
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccI	GTMKAC	2 cut(s)	66, 86
AccII	CGCG	4 cut(s)	54, 82, 246, 377
AclWI	GGATC	8 cut(s)	175, 188, 201, 659, 689, 753, 793, 799
AcyI	GRCGYC	3 cut(s)	89, 309, 423
AfaI	GTAC	2 cut(s)	101, 398
AfiI	CCNNNNNNNGG	7 cut(s)	190, 539, 620, 626, 627, 742, 782
AgsI	TTSAA	2 cut(s)	370, 493
AjnI	CCWGG	1 cut(s)	606
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	5 cut(s)	211, 563, 687, 729, 827
AluI	AGCT	5 cut(s)	211, 563, 687, 729, 827
Alw21I	GWGCWC	3 cut(s)	36, 213, 731
Alw26I	GTCTC	4 cut(s)	242, 254, 404, 497
AlwI	GGATC	8 cut(s)	175, 188, 201, 659, 689, 753, 793, 799
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	3 cut(s)	188, 335, 620
AoxI	GGCC	3 cut(s)	331, 357, 609
ApeKI	GCWGC	6 cut(s)	40, 174, 241, 560, 674, 824
AspLEI	GCGC	5 cut(s)	54, 246, 311, 351, 379
AspS9I	GGNCC	4 cut(s)	169, 543, 610, 624
AsuC2I	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
AsuHPI	GGTGA	4 cut(s)	461, 490, 512, 633
AvaI	CYCGRG	3 cut(s)	188, 335, 620
AvaII	GGWCC	3 cut(s)	169, 543, 624
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	213, 731
Bbv12I	GWGCWC	3 cut(s)	36, 213, 731
BbvI	GCAGC	5 cut(s)	27, 161, 253, 572, 661
BccI	CCATC	1 cut(s)	813
BceAI	ACGGC	2 cut(s)	47, 322
BciT130I	CCWGG	1 cut(s)	608
BcnI	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
BcoDI	GTCTC	4 cut(s)	242, 254, 404, 497
BfaI	CTAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	312
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	9 cut(s)	152, 237, 473, 547, 574, 608, 621, 622, 628
Bme18I	GGWCC	3 cut(s)	169, 543, 624
BmeT110I	CYCGRG	3 cut(s)	188, 335, 620
BmgT120I	GGNCC	4 cut(s)	169, 543, 610, 624
BmiI	GGNNCC	6 cut(s)	119, 195, 310, 544, 612, 625
BmrFI	CCNGG	9 cut(s)	152, 237, 473, 547, 574, 608, 621, 622, 628
BmsI	GCATC	1 cut(s)	540
BoxI	GACNNNNGTC	2 cut(s)	254, 453
BpmI	CTGGAG	3 cut(s)	104, 187, 759
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
BsaBI	GATNNNNATC	1 cut(s)	790
BsaHI	GRCGYC	3 cut(s)	89, 309, 423
BsaI	GGTCTC	2 cut(s)	242, 254
BsaJI	CCNNGG	4 cut(s)	80, 236, 334, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	7 cut(s)	190, 539, 620, 626, 627, 742, 782
Bse118I	RCCGGY	2 cut(s)	311, 595
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	4 cut(s)	80, 236, 334, 620
BseGI	GGATG	3 cut(s)	555, 794, 824
BseJI	GATNNNNATC	1 cut(s)	790
BseLI	CCNNNNNNNGG	7 cut(s)	190, 539, 620, 626, 627, 742, 782
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	3 cut(s)	32, 35, 265
BseXI	GCAGC	5 cut(s)	27, 161, 253, 572, 661
BseYI	CCCAGC	1 cut(s)	563
Bsh1236I	CGCG	4 cut(s)	54, 82, 246, 377
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	333, 359, 611
BshNI	GGYRCC	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	3 cut(s)	36, 213, 731
BsiHKCI	CYCGRG	3 cut(s)	188, 335, 620
BslFI	GGGAC	2 cut(s)	215, 556
BslI	CCNNNNNNNGG	7 cut(s)	190, 539, 620, 626, 627, 742, 782
BsmAI	GTCTC	4 cut(s)	242, 254, 404, 497
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	215, 556
BsnI	GGCC	3 cut(s)	333, 359, 611
Bso31I	GGTCTC	2 cut(s)	242, 254
BsoBI	CYCGRG	3 cut(s)	188, 335, 620
Bsp1286I	GDGCHC	3 cut(s)	36, 213, 731
BspANI	GGCC	3 cut(s)	333, 359, 611
BspCNI	CTCAG	1 cut(s)	648
BspFNI	CGCG	4 cut(s)	54, 82, 246, 377
BspLI	GGNNCC	6 cut(s)	119, 195, 310, 544, 612, 625
BspPI	GGATC	8 cut(s)	175, 188, 201, 659, 689, 753, 793, 799
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	2 cut(s)	242, 254
BsrFI	RCCGGY	2 cut(s)	311, 595
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	2 cut(s)	311, 595
BssECI	CCNNGG	4 cut(s)	80, 236, 334, 620
BssNI	GRCGYC	3 cut(s)	89, 309, 423
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	265, 455
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	3 cut(s)	89, 309, 423
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstC8I	GCNNGC	6 cut(s)	209, 223, 313, 317, 321, 597
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	555, 794, 824
BstFNI	CGCG	4 cut(s)	54, 82, 246, 377
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	5 cut(s)	54, 246, 311, 351, 379
BstMAI	GTCTC	4 cut(s)	242, 254, 404, 497
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 49, 171, 241, 435, 438, 441, 592
BstNI	CCWGG	1 cut(s)	608
BstPAI	GACNNNNGTC	2 cut(s)	254, 453
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	9 cut(s)	150, 235, 471, 545, 572, 606, 619, 620, 626
BstUI	CGCG	4 cut(s)	54, 82, 246, 377
BstV1I	GCAGC	5 cut(s)	27, 161, 253, 572, 661
BstX2I	RGATCY	4 cut(s)	132, 180, 193, 745
BstYI	RGATCY	4 cut(s)	132, 180, 193, 745
BsuRI	GGCC	3 cut(s)	333, 359, 611
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	555, 794, 824
Cac8I	GCNNGC	6 cut(s)	209, 223, 313, 317, 321, 597
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	5 cut(s)	54, 246, 311, 351, 379
Cfr10I	RCCGGY	2 cut(s)	311, 595
Cfr13I	GGNCC	4 cut(s)	169, 543, 610, 624
Cfr42I	CCGCGG	1 cut(s)	83
Cfr9I	CCCGGG	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	100, 397
CviQI	GTAC	2 cut(s)	100, 397
DdeI	CTNAG	1 cut(s)	635
DinI	GGCGCC	1 cut(s)	310
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	2 cut(s)	211, 729
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	213, 731
Eco31I	GGTCTC	2 cut(s)	242, 254
Eco47I	GGWCC	3 cut(s)	169, 543, 624
Eco53kI	GAGCTC	2 cut(s)	211, 729
Eco88I	CYCGRG	3 cut(s)	188, 335, 620
Eco91I	GGTNACC	1 cut(s)	639
EcoICRI	GAGCTC	2 cut(s)	211, 729
EcoO65I	GGTNACC	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	213, 731
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	497
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	215, 556
FauI	CCCGC	5 cut(s)	84, 89, 240, 287, 621
FblI	GTMKAC	2 cut(s)	66, 86
FokI	GGATG	2 cut(s)	562, 781
FriOI	GRGCYC	2 cut(s)	213, 731
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	5 cut(s)	53, 245, 310, 350, 378
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	3 cut(s)	104, 187, 759
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	333, 359, 611
HhaI	GCGC	5 cut(s)	54, 246, 311, 351, 379
Hin1I	GRCGYC	3 cut(s)	89, 309, 423
Hin6I	GCGC	5 cut(s)	52, 244, 309, 349, 377
HinP1I	GCGC	5 cut(s)	52, 244, 309, 349, 377
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	23, 272, 481, 766
HphI	GGTGA	4 cut(s)	461, 490, 512, 633
Hpy166II	GTNNAC	3 cut(s)	67, 87, 469
Hpy188I	TCNGA	5 cut(s)	127, 385, 733, 745, 833
Hpy188III	TCNNGA	5 cut(s)	136, 259, 295, 389, 789
Hpy8I	GTNNAC	3 cut(s)	67, 87, 469
Hpy99I	CGWCG	7 cut(s)	91, 260, 377, 428, 449, 452, 538
HpyAV	CCTTC	4 cut(s)	334, 370, 487, 491
HpyCH4III	ACNGT	2 cut(s)	265, 455
HpyCH4IV	ACGT	4 cut(s)	89, 372, 399, 423
HpyCH4V	TGCA	3 cut(s)	165, 719, 812
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 49, 171, 241, 435, 438, 441, 592
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	4 cut(s)	89, 372, 399, 423
Hsp92I	GRCGYC	3 cut(s)	89, 309, 423
HspAI	GCGC	5 cut(s)	52, 244, 309, 349, 377
KasI	GGCGCC	1 cut(s)	308
KroI	GCCGGC	2 cut(s)	311, 595
KroNI	GCCGGC	2 cut(s)	313, 597
KspI	CCGCGG	1 cut(s)	83
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	123, 734
Lsp1109I	GCAGC	5 cut(s)	27, 161, 253, 572, 661
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	4 cut(s)	89, 372, 399, 423
MaeIII	GTNAC	2 cut(s)	455, 639
MboII	GAAGA	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	4 cut(s)	132, 180, 193, 745
MhlI	GDGCHC	3 cut(s)	36, 213, 731
MluCI	AATT	1 cut(s)	756
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	32, 266
MmeI	TCCRAC	2 cut(s)	150, 756
MroNI	GCCGGC	2 cut(s)	311, 595
MseI	TTAA	1 cut(s)	602
MspA1I	CMGCKG	3 cut(s)	82, 174, 563
MspR9I	CCNGG	9 cut(s)	152, 237, 473, 547, 574, 608, 621, 622, 628
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	608
MvnI	CGCG	4 cut(s)	54, 82, 246, 377
MwoI	GCNNNNNNNGC	8 cut(s)	40, 49, 171, 241, 435, 438, 441, 592
NaeI	GCCGGC	2 cut(s)	313, 597
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	8 cut(s)	152, 237, 473, 547, 574, 621, 622, 628
NgoMIV	GCCGGC	2 cut(s)	311, 595
NlaIV	GGNNCC	6 cut(s)	119, 195, 310, 544, 612, 625
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	455, 639
PaeR7I	CTCGAG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	5 cut(s)	342, 360, 369, 381, 396
PdiI	GCCGGC	2 cut(s)	313, 597
PfeI	GAWTC	2 cut(s)	481, 766
PflMI	CCANNNNNTGG	1 cut(s)	782
PfoI	TCCNGGA	1 cut(s)	626
PleI	GAGTC	2 cut(s)	31, 266
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	31, 266
PshAI	GACNNNNGTC	2 cut(s)	254, 453
Psp124BI	GAGCTC	2 cut(s)	213, 731
Psp6I	CCWGG	1 cut(s)	606
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	6 cut(s)	119, 195, 310, 544, 612, 625
PspPI	GGNCC	4 cut(s)	169, 543, 610, 624
PspXI	VCTCGAGB	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	4 cut(s)	132, 180, 193, 745
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	101, 398
RsaNI	GTAC	2 cut(s)	100, 397
SacI	GAGCTC	2 cut(s)	213, 731
SacII	CCGCGG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	602
Sau96I	GGNCC	4 cut(s)	169, 543, 610, 624
SchI	GAGTC	2 cut(s)	32, 266
ScrFI	CCNGG	9 cut(s)	152, 237, 473, 547, 574, 608, 621, 622, 628
SduI	GDGCHC	3 cut(s)	36, 213, 731
SfaNI	GCATC	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	310
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SinI	GGWCC	3 cut(s)	169, 543, 624
SlaI	CTCGAG	1 cut(s)	188
SmaI	CCCGGG	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	188, 293
SmoI	CTYRAG	2 cut(s)	188, 293
Sse9I	AATT	1 cut(s)	756
SseBI	AGGCCT	1 cut(s)	359
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	2 cut(s)	213, 731
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	9 cut(s)	150, 235, 471, 545, 572, 606, 619, 620, 626
TaaI	ACNGT	2 cut(s)	265, 455
TaiI	ACGT	4 cut(s)	92, 375, 402, 426
TaqI	TCGA	7 cut(s)	30, 86, 189, 258, 270, 300, 363
TasI	AATT	1 cut(s)	756
TfiI	GAWTC	2 cut(s)	481, 766
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TseFI	GTSAC	2 cut(s)	455, 639
TseI	GCWGC	6 cut(s)	40, 174, 241, 560, 674, 824
Tsp45I	GTSAC	2 cut(s)	455, 639
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	244
TspMI	CCCGGG	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	3 cut(s)	169, 543, 624
XhoI	CTCGAG	1 cut(s)	188
XmaI	CCCGGG	1 cut(s)	620
XmiI	GTMKAC	2 cut(s)	66, 86
XspI	CTAG	1 cut(s)	678
ZraI	GACGTC	2 cut(s)	90, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.