Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

43204975 .. 43208476

Gene Structure 3502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCTAATTCCAGCAGCGACGAGAAGCTCGGCGAGAGCGGAGAAGGTCGTGCATGGACCGGTGTGAGATCTGACTGGAGGATCCAAATTCCAGCGACCTCCGTCAAGATTGTGCTCGAATCGTCGCGCTACTTCATCCTCAGGATCGAGGATGGCACCGGCAAGCACGCCTTCATAGGCCTCGAGTTCGCCGAGCGCAAAGCGGCGTTTGATTTCATCATTGCGCTCTCCTATCTCGACAAGTATGTCAAGAGACGAAGAGGCTTTGTACGACGCCCGATCAACCTGAATGATTCGGAGCGATTTGATTACCAGCGAGTCAGCATCGCTTCAAGAACTCGTACACCGATCCCAAGGAAGCGTCATTCTTCGCCATTCGCACTCTCTCGAGGCGTCGCTCATGGAGAAGAGCTATTCCCACCGCCACTCGTTGTCGTCTTCCGACAATCTAAGAAGGCCGATGTCGTCAAGAAGACCGATGATGTCAGGCACAAGGTTGACTGGCTGAGGAAGACGACAAGTCGTCAGTGCACGATTCCGTCAAGTCCAAAAAATTCAGGATCGTCGCCCGGGAAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

194

Amino Acids

21.9

Weight (kDa)

10.39

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	32 - 88	1.3e-16	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	127
AciI	CCGC	3 cut(s)	39, 203, 422
AclWI	GGATC	5 cut(s)	76, 89, 152, 343, 568
AcsI	RAATTY	2 cut(s)	87, 553
AcyI	GRCGYC	2 cut(s)	274, 393
AfaI	GTAC	2 cut(s)	270, 343
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	333
AhdI	GACNNNNNGTC	2 cut(s)	519, 522
AluBI	AGCT	3 cut(s)	28, 412, 579
AluI	AGCT	3 cut(s)	28, 412, 579
Alw21I	GWGCWC	2 cut(s)	117, 533
Alw26I	GTCTC	1 cut(s)	247
Alw44I	GTGCAC	1 cut(s)	529
AlwI	GGATC	5 cut(s)	76, 89, 152, 343, 568
Ama87I	CYCGRG	3 cut(s)	182, 387, 569
AoxI	GGCC	2 cut(s)	178, 456
ApaLI	GTGCAC	1 cut(s)	529
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	87, 553
AsiGI	ACCGGT	1 cut(s)	59
AspLEI	GCGC	3 cut(s)	129, 198, 226
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	2 cut(s)	570, 571
AvaI	CYCGRG	3 cut(s)	182, 387, 569
AvaII	GGWCC	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	533
BamHI	GGATCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	3 cut(s)	430, 479, 518
Bbv12I	GWGCWC	2 cut(s)	117, 533
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	146
BcnI	CCSGG	2 cut(s)	570, 571
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	580
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	2 cut(s)	16, 204
BlsI	GCNGC	2 cut(s)	17, 205
Bme1390I	CCNGG	2 cut(s)	570, 571
Bme18I	GGWCC	1 cut(s)	57
BmeRI	GACNNNNNGTC	2 cut(s)	519, 522
BmeT110I	CYCGRG	3 cut(s)	182, 387, 569
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	83, 157
BmrFI	CCNGG	2 cut(s)	570, 571
BmsI	GCATC	1 cut(s)	333
BoxI	GACNNNNGTC	1 cut(s)	101
BpiI	GAAGAC	3 cut(s)	430, 479, 518
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	506
BpuMI	CCSGG	2 cut(s)	570, 571
BsaHI	GRCGYC	2 cut(s)	274, 393
BsaJI	CCNNGG	2 cut(s)	353, 569
BsaWI	WCCGGW	1 cut(s)	59
Bse118I	RCCGGY	2 cut(s)	59, 158
Bse1I	ACTGG	2 cut(s)	80, 506
Bse21I	CCTNAGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	353, 569
BseGI	GGATG	2 cut(s)	135, 157
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	154, 497
BseNI	ACTGG	2 cut(s)	80, 506
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	180, 458
BshNI	GGYRCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	117, 533
BsiHKCI	CYCGRG	3 cut(s)	182, 387, 569
BsiSI	CCGG	3 cut(s)	60, 159, 570
BsmAI	GTCTC	1 cut(s)	247
BsmBI	CGTCTC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	180, 458
BsoBI	CYCGRG	3 cut(s)	182, 387, 569
Bsp1286I	GDGCHC	2 cut(s)	117, 533
Bsp143I	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
BspACI	CCGC	3 cut(s)	39, 203, 422
BspANI	GGCC	2 cut(s)	180, 458
BspCNI	CTCAG	2 cut(s)	153, 498
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	83, 157
BspPI	GGATC	5 cut(s)	76, 89, 152, 343, 568
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	59, 158
BsrI	ACTGG	2 cut(s)	80, 506
BssAI	RCCGGY	2 cut(s)	59, 158
BssECI	CCNNGG	2 cut(s)	353, 569
BssMI	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
BssNI	GRCGYC	2 cut(s)	274, 393
BssT1I	CCWWGG	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	253, 402
BstACI	GRCGYC	2 cut(s)	274, 393
BstC8I	GCNNGC	2 cut(s)	164, 168
BstDEI	CTNAG	3 cut(s)	140, 450, 506
BstF5I	GGATG	2 cut(s)	135, 157
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	3 cut(s)	129, 198, 226
BstKTI	GATC	6 cut(s)	71, 84, 147, 282, 351, 563
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	568, 569
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	3 cut(s)	430, 479, 518
BstX2I	RGATCY	2 cut(s)	68, 81
BstYI	RGATCY	2 cut(s)	68, 81
Bsu36I	CCTNAGG	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	180, 458
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	135, 157
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	164, 168
CfoI	GCGC	3 cut(s)	129, 198, 226
Cfr10I	RCCGGY	2 cut(s)	59, 158
Cfr13I	GGNCC	1 cut(s)	57
Cfr9I	CCCGGG	1 cut(s)	569
CseI	GACGC	3 cut(s)	282, 350, 382
Csp6I	GTAC	2 cut(s)	269, 342
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	2 cut(s)	54, 401
CviJI	RGCY	7 cut(s)	28, 180, 264, 412, 458, 505, 579
CviKI_1	RGCY	7 cut(s)	28, 180, 264, 412, 458, 505, 579
CviQI	GTAC	2 cut(s)	269, 342
DdeI	CTNAG	3 cut(s)	140, 450, 506
DpnI	GATC	6 cut(s)	70, 83, 146, 281, 350, 562
DpnII	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
DrdI	GACNNNNNNGTC	1 cut(s)	245
DriI	GACNNNNNGTC	2 cut(s)	519, 522
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	253, 402
Eam1105I	GACNNNNNGTC	2 cut(s)	519, 522
EarI	CTCTTC	2 cut(s)	253, 402
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	57
Eco81I	CCTNAGG	1 cut(s)	140
Eco88I	CYCGRG	3 cut(s)	182, 387, 569
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	2 cut(s)	57, 404
FaiI	YATR	4 cut(s)	55, 176, 246, 402
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	2 cut(s)	53, 400
Fnu4HI	GCNGC	2 cut(s)	16, 204
FokI	GGATG	2 cut(s)	122, 164
Fsp4HI	GCNGC	2 cut(s)	16, 204
FspBI	CTAG	1 cut(s)	580
GlaI	GCGC	3 cut(s)	128, 197, 225
GluI	GCNGC	2 cut(s)	16, 204
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	180, 458
HapII	CCGG	3 cut(s)	60, 159, 570
HgaI	GACGC	3 cut(s)	282, 350, 382
HhaI	GCGC	3 cut(s)	129, 198, 226
Hin1I	GRCGYC	2 cut(s)	274, 393
Hin1II	CATG	2 cut(s)	57, 404
Hin6I	GCGC	3 cut(s)	127, 196, 224
HinP1I	GCGC	3 cut(s)	127, 196, 224
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	4 cut(s)	119, 293, 318, 535
HpaII	CCGG	3 cut(s)	60, 159, 570
Hpy166II	GTNNAC	3 cut(s)	344, 499, 531
Hpy188I	TCNGA	3 cut(s)	73, 298, 443
Hpy188III	TCNNGA	8 cut(s)	106, 142, 236, 250, 333, 387, 469, 558
Hpy8I	GTNNAC	3 cut(s)	344, 499, 531
Hpy99I	CGWCG	5 cut(s)	23, 127, 276, 398, 568
HpyAV	CCTTC	3 cut(s)	38, 181, 448
HpyCH4V	TGCA	2 cut(s)	53, 531
HpyF3I	CTNAG	3 cut(s)	140, 450, 506
Hsp92I	GRCGYC	2 cut(s)	274, 393
Hsp92II	CATG	2 cut(s)	57, 404
HspAI	GCGC	3 cut(s)	127, 196, 224
Kzo9I	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	580
MalI	GATC	6 cut(s)	70, 83, 146, 281, 350, 562
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
MboII	GAAGA	6 cut(s)	270, 360, 419, 430, 484, 523
MflI	RGATCY	2 cut(s)	68, 81
MhlI	GDGCHC	2 cut(s)	117, 533
MluCI	AATT	3 cut(s)	7, 87, 553
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	72, 109, 142, 149, 191, 254, 383, 501
MspI	CCGG	3 cut(s)	60, 159, 570
MspR9I	CCNGG	2 cut(s)	570, 571
MvnI	CGCG	1 cut(s)	127
NciI	CCSGG	2 cut(s)	570, 571
NdeII	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
NlaIII	CATG	2 cut(s)	57, 404
NlaIV	GGNNCC	2 cut(s)	83, 157
NmeAIII	GCCGAG	2 cut(s)	9, 217
PaeR7I	CTCGAG	2 cut(s)	182, 387
PceI	AGGCCT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	119, 293, 535
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	17, 205
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PshAI	GACNNNNGTC	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	83, 157
PspPI	GGNCC	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	68, 81
RsaI	GTAC	2 cut(s)	270, 343
RsaNI	GTAC	2 cut(s)	269, 342
SapI	GCTCTTC	1 cut(s)	402
SatI	GCNGC	2 cut(s)	16, 204
Sau3AI	GATC	6 cut(s)	68, 81, 144, 279, 348, 560
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	570, 571
SduI	GDGCHC	2 cut(s)	117, 533
SetI	ASST	7 cut(s)	30, 49, 101, 288, 414, 498, 581
SfaNI	GCATC	1 cut(s)	333
Sfr274I	CTCGAG	2 cut(s)	182, 387
SinI	GGWCC	1 cut(s)	57
SlaI	CTCGAG	2 cut(s)	182, 387
SmaI	CCCGGG	1 cut(s)	571
SmlI	CTYRAG	2 cut(s)	182, 387
SmoI	CTYRAG	2 cut(s)	182, 387
Sse9I	AATT	3 cut(s)	7, 87, 553
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	3 cut(s)	39, 203, 422
SspMI	CTAG	1 cut(s)	580
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	568, 569
StyI	CCWWGG	1 cut(s)	353
TaqI	TCGA	5 cut(s)	117, 147, 183, 237, 388
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	3 cut(s)	7, 87, 553
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	119, 293, 535
TscAI	CASTG	1 cut(s)	533
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	124, 163, 205
TspGWI	ACGGA	2 cut(s)	91, 528
TspMI	CCCGGG	1 cut(s)	569
TspRI	CASTG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	87, 553
XhoI	CTCGAG	2 cut(s)	182, 387
XmaI	CCCGGG	1 cut(s)	569
XspI	CTAG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.