Rh2AG061100

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003015
Physical Location & Seq
Forward (+)
4992214 .. 4992591
378 bp
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UTR
Exon/CDS
Intron
Rh2AG061100.1

Sequence Viewer

Length: 252 bp
ATGCAGCCAGTAGCAACAAGAAGCTCGCCAAGAGCAGAGAAGGTCACCGAGAGAGGAGGAGGTCGTGCAAGGACTGGTGCGAGATCTGACTGGAGGATCCGAACTCCAGCGACCTCCGTCAAGACCGTGCTTGACTCGTCTCGCTACTTCGTCCTCAAGATCGAGGATGGCACCGGCAAGCACACCTTCCTCGGCCTCGGGTTCGCCGAGCGCAAAGTGCGTTCGATTTCAATGTCGCGCTCTCCTATCTAG

Protein Analysis

83

Amino Acids

9.16

Weight (kDa)

11.55

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 35 - 72 3.6e-13 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AccII CGCG 1 cut(s) 238
AclWI GGATC 2 cut(s) 91, 104
AgsI TTSAA 1 cut(s) 231
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 91, 104
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 2 cut(s) 213, 240
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 197
BamHI GGATCC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 250
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 98, 172
BoxI GACNNNNGTC 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 90, 112
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 190, 196
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 3 cut(s) 8, 79, 95
BseDI CCNNGG 2 cut(s) 190, 196
BseGI GGATG 1 cut(s) 172
BseNI ACTGG 3 cut(s) 8, 79, 95
BseRI GAGGAG 2 cut(s) 69, 72
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 197
Bsp143I GATC 3 cut(s) 83, 96, 159
BspANI GGCC 1 cut(s) 195
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 98, 172
BspPI GGATC 2 cut(s) 91, 104
BspT107I GGYRCC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 3 cut(s) 8, 79, 95
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 190, 196
BssMI GATC 3 cut(s) 83, 96, 159
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 26, 179
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 2 cut(s) 213, 240
BstKTI GATC 3 cut(s) 86, 99, 162
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 83, 96, 159
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 43
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 83, 96
BstYI RGATCY 2 cut(s) 83, 96
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 26, 179
CfoI GCGC 2 cut(s) 213, 240
Cfr10I RCCGGY 1 cut(s) 173
CviJI RGCY 3 cut(s) 7, 24, 195
CviKI_1 RGCY 3 cut(s) 7, 24, 195
DpnI GATC 3 cut(s) 85, 98, 161
DpnII GATC 3 cut(s) 83, 96, 159
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 144
FalI AAGNNNNNCTT 2 cut(s) 170, 202
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 250
GlaI GCGC 2 cut(s) 212, 239
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 2 cut(s) 90, 112
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 174
HhaI GCGC 2 cut(s) 213, 240
Hin6I GCGC 2 cut(s) 211, 238
HinP1I GCGC 2 cut(s) 211, 238
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 88, 101
Hpy188III TCNNGA 2 cut(s) 121, 157
HpyAV CCTTC 2 cut(s) 34, 196
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 4, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HspAI GCGC 2 cut(s) 211, 238
Kzo9I GATC 3 cut(s) 83, 96, 159
LpnPI CCDG 5 cut(s) 21, 60, 76, 120, 187
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 85, 98, 161
MboI GATC 3 cut(s) 83, 96, 159
MflI RGATCY 2 cut(s) 83, 96
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 9 cut(s) 47, 50, 53, 87, 124, 157, 164, 200, 206
MspI CCGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 3 cut(s) 83, 96, 159
NlaIV GGNNCC 2 cut(s) 98, 172
NmeAIII GCCGAG 2 cut(s) 171, 232
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 98, 172
PsuI RGATCY 2 cut(s) 83, 96
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 83, 96, 159
SchI GAGTC 1 cut(s) 128
SetI ASST 5 cut(s) 26, 45, 64, 116, 188
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SspMI CTAG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 162, 224
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 106
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.