Rh6BG307100

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003015
Physical Location & Seq
Reverse (-)
53634871 .. 53637603
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG307100.1

Sequence Viewer

Length: 822 bp
ATGTCGTTTGAGGACGAGGAGGAGTCGTTCGAGCACACGCTGCTGGTGGTGCGCGAGGTCGCCGTCTACAAAATCCCGCCGCGGTCGACGTCCGGCGGGTACAAGTGCGGCGAGTGGCTCCAGTCCGACAAGATCTGGACGGGTCGCCTCCGGGTCGTGTCCTGCAAGGACCGGTGCGAGATCCGGCTCGAGGATCCCAACTCCAGCGAGCTCTTCGCCGCCTGCTTCGTCCCGCCGGGGCAGCGCGAGACCTCCGTCGAGACCGTCCTCGACTCCTCCCGCTACTTCGTCCTCAAGATCGAGGACGGCGCCGGCAAGCACGCCTTCATCGGCCTCGGGTTCGCCGAGCGCAACGAGGCCTTCGATTTCAACGTCGCGCTCTCCGATCACGACAAGTACGTCAAGCGAGAGACTGATAATGACGTCGGCGGCGACGACGACAGTCACATTGAGGTTCACCCGGCGGTGAATCACAGATTGAAGGAAGGTGAGACGATAAGGATAAATGTGAAGCCGAAGCCGACGAGTGGGACCGGGATGCTGTCAGCAGCTGGGCTATCCGGGTCGGCAAAGCCCAAATCGCCGGCTTTAAGCCTGGCCCCGCCACCTGGGTCCGGGAAACTCAGGTCACCTCTGCCGCCGCCTCCAAATGATCCTGTTGCTGCTAGGATCAGCTCTGGTGGTGTCAAACCTCCACAGGATAGTGCAAGAAAGAGCTCCGACCCGTTATCGGATCTTTTGCCAATTGAGAGGAATCTGCCTCCAGCAAATGGATCAGGATCATCCACAAAGACAAATGCAGTAGGATGGGCAGCTTTCTGA

Protein Analysis

273

Amino Acids

29.4

Weight (kDa)

5.76

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 10 - 171 8.2e-58 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AatII GACGTC 2 cut(s) 92, 426
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 770
AccI GTMKAC 2 cut(s) 66, 86
AccII CGCG 4 cut(s) 54, 82, 246, 377
AclWI GGATC 8 cut(s) 175, 188, 201, 647, 677, 741, 781, 787
AcyI GRCGYC 3 cut(s) 89, 309, 423
AfaI GTAC 2 cut(s) 101, 398
AfiI CCNNNNNNNGG 6 cut(s) 190, 527, 608, 614, 730, 770
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 370, 481
AjnI CCWGG 2 cut(s) 594, 607
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 5 cut(s) 211, 551, 675, 717, 815
AluI AGCT 5 cut(s) 211, 551, 675, 717, 815
Alw21I GWGCWC 3 cut(s) 36, 213, 719
Alw26I GTCTC 4 cut(s) 242, 254, 404, 485
AlwI GGATC 8 cut(s) 175, 188, 201, 647, 677, 741, 781, 787
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 2 cut(s) 188, 335
AoxI GGCC 3 cut(s) 331, 357, 597
ApeKI GCWGC 5 cut(s) 40, 241, 548, 662, 812
AsiGI ACCGGT 1 cut(s) 171
AspLEI GCGC 5 cut(s) 54, 246, 311, 351, 379
AspS9I GGNCC 4 cut(s) 169, 531, 598, 612
AsuC2I CCSGG 6 cut(s) 152, 237, 461, 535, 562, 616
AsuHPI GGTGA 4 cut(s) 449, 478, 500, 621
AvaI CYCGRG 2 cut(s) 188, 335
AvaII GGWCC 3 cut(s) 169, 531, 612
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 213, 719
Bbv12I GWGCWC 3 cut(s) 36, 213, 719
BbvI GCAGC 4 cut(s) 27, 253, 560, 649
BccI CCATC 1 cut(s) 801
BceAI ACGGC 2 cut(s) 47, 322
BciT130I CCWGG 2 cut(s) 596, 609
BcnI CCSGG 6 cut(s) 152, 237, 461, 535, 562, 616
BcoDI GTCTC 4 cut(s) 242, 254, 404, 485
BfaI CTAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 312
BglII AGATCT 1 cut(s) 132
Bme1390I CCNGG 8 cut(s) 152, 237, 461, 535, 562, 596, 609, 616
Bme18I GGWCC 3 cut(s) 169, 531, 612
BmeT110I CYCGRG 2 cut(s) 188, 335
BmgT120I GGNCC 4 cut(s) 169, 531, 598, 612
BmiI GGNNCC 6 cut(s) 119, 195, 310, 532, 600, 613
BmrFI CCNGG 8 cut(s) 152, 237, 461, 535, 562, 596, 609, 616
BmsI GCATC 1 cut(s) 528
BoxI GACNNNNGTC 2 cut(s) 254, 441
BpmI CTGGAG 3 cut(s) 104, 187, 747
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 6 cut(s) 152, 237, 461, 535, 562, 616
BsaBI GATNNNNATC 1 cut(s) 778
BsaHI GRCGYC 3 cut(s) 89, 309, 423
BsaI GGTCTC 2 cut(s) 242, 254
BsaJI CCNNGG 4 cut(s) 80, 236, 334, 608
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 6 cut(s) 190, 527, 608, 614, 730, 770
Bse118I RCCGGY 3 cut(s) 171, 311, 583
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 778
BseBI CCWGG 2 cut(s) 596, 609
BseDI CCNNGG 4 cut(s) 80, 236, 334, 608
BseGI GGATG 3 cut(s) 543, 782, 812
BseJI GATNNNNATC 1 cut(s) 778
BseLI CCNNNNNNNGG 6 cut(s) 190, 527, 608, 614, 730, 770
BseMII CTCAG 1 cut(s) 637
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 3 cut(s) 32, 35, 265
BseXI GCAGC 4 cut(s) 27, 253, 560, 649
BseYI CCCAGC 1 cut(s) 551
Bsh1236I CGCG 4 cut(s) 54, 82, 246, 377
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 333, 359, 599
BshNI GGYRCC 1 cut(s) 308
BshTI ACCGGT 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 3 cut(s) 36, 213, 719
BsiHKCI CYCGRG 2 cut(s) 188, 335
BslFI GGGAC 2 cut(s) 215, 544
BslI CCNNNNNNNGG 6 cut(s) 190, 527, 608, 614, 730, 770
BsmAI GTCTC 4 cut(s) 242, 254, 404, 485
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 215, 544
BsnI GGCC 3 cut(s) 333, 359, 599
Bso31I GGTCTC 2 cut(s) 242, 254
BsoBI CYCGRG 2 cut(s) 188, 335
Bsp1286I GDGCHC 3 cut(s) 36, 213, 719
BspANI GGCC 3 cut(s) 333, 359, 599
BspCNI CTCAG 1 cut(s) 636
BspFNI CGCG 4 cut(s) 54, 82, 246, 377
BspLI GGNNCC 6 cut(s) 119, 195, 310, 532, 600, 613
BspPI GGATC 8 cut(s) 175, 188, 201, 647, 677, 741, 781, 787
BspQI GCTCTTC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 2 cut(s) 242, 254
BsrFI RCCGGY 3 cut(s) 171, 311, 583
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 3 cut(s) 171, 311, 583
BssECI CCNNGG 4 cut(s) 80, 236, 334, 608
BssNI GRCGYC 3 cut(s) 89, 309, 423
Bst2UI CCWGG 2 cut(s) 596, 609
Bst4CI ACNGT 2 cut(s) 265, 443
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 3 cut(s) 89, 309, 423
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 6 cut(s) 209, 223, 313, 317, 321, 585
BstDEI CTNAG 1 cut(s) 623
BstDSI CCRYGG 1 cut(s) 80
BstEII GGTNACC 1 cut(s) 627
BstF5I GGATG 3 cut(s) 543, 782, 812
BstFNI CGCG 4 cut(s) 54, 82, 246, 377
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 5 cut(s) 54, 246, 311, 351, 379
BstMAI GTCTC 4 cut(s) 242, 254, 404, 485
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 4 cut(s) 40, 49, 241, 580
BstNI CCWGG 2 cut(s) 596, 609
BstPAI GACNNNNGTC 2 cut(s) 254, 441
BstPI GGTNACC 1 cut(s) 627
BstSCI CCNGG 8 cut(s) 150, 235, 459, 533, 560, 594, 607, 614
BstUI CGCG 4 cut(s) 54, 82, 246, 377
BstV1I GCAGC 4 cut(s) 27, 253, 560, 649
BstX2I RGATCY 4 cut(s) 132, 180, 193, 733
BstYI RGATCY 4 cut(s) 132, 180, 193, 733
BsuRI GGCC 3 cut(s) 333, 359, 599
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 3 cut(s) 543, 782, 812
Cac8I GCNNGC 6 cut(s) 209, 223, 313, 317, 321, 585
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 5 cut(s) 54, 246, 311, 351, 379
Cfr10I RCCGGY 3 cut(s) 171, 311, 583
Cfr13I GGNCC 4 cut(s) 169, 531, 598, 612
Cfr42I CCGCGG 1 cut(s) 83
Csp6I GTAC 2 cut(s) 100, 397
CspAI ACCGGT 1 cut(s) 171
CviQI GTAC 2 cut(s) 100, 397
DdeI CTNAG 1 cut(s) 623
DinI GGCGCC 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 2 cut(s) 211, 717
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 2 cut(s) 213, 719
Eco31I GGTCTC 2 cut(s) 242, 254
Eco47I GGWCC 3 cut(s) 169, 531, 612
Eco53kI GAGCTC 2 cut(s) 211, 717
Eco88I CYCGRG 2 cut(s) 188, 335
Eco91I GGTNACC 1 cut(s) 627
EcoICRI GAGCTC 2 cut(s) 211, 717
EcoO65I GGTNACC 1 cut(s) 627
EcoRII CCWGG 2 cut(s) 594, 607
EcoT38I GRGCYC 2 cut(s) 213, 719
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 485
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 2 cut(s) 215, 544
FauI CCCGC 5 cut(s) 84, 89, 240, 287, 609
FblI GTMKAC 2 cut(s) 66, 86
FokI GGATG 2 cut(s) 550, 769
FriOI GRGCYC 2 cut(s) 213, 719
FspBI CTAG 1 cut(s) 666
GlaI GCGC 5 cut(s) 53, 245, 310, 350, 378
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 3 cut(s) 104, 187, 747
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 3 cut(s) 333, 359, 599
HhaI GCGC 5 cut(s) 54, 246, 311, 351, 379
Hin1I GRCGYC 3 cut(s) 89, 309, 423
Hin6I GCGC 5 cut(s) 52, 244, 309, 349, 377
HinP1I GCGC 5 cut(s) 52, 244, 309, 349, 377
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 4 cut(s) 23, 272, 469, 754
HphI GGTGA 4 cut(s) 449, 478, 500, 621
Hpy166II GTNNAC 3 cut(s) 67, 87, 457
Hpy188I TCNGA 5 cut(s) 127, 385, 721, 733, 821
Hpy188III TCNNGA 5 cut(s) 136, 259, 295, 389, 777
Hpy8I GTNNAC 3 cut(s) 67, 87, 457
Hpy99I CGWCG 7 cut(s) 91, 260, 377, 428, 437, 440, 526
HpyAV CCTTC 4 cut(s) 334, 370, 475, 479
HpyCH4III ACNGT 2 cut(s) 265, 443
HpyCH4IV ACGT 4 cut(s) 89, 372, 399, 423
HpyCH4V TGCA 3 cut(s) 165, 707, 800
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 49, 241, 580
HpyF3I CTNAG 1 cut(s) 623
HpySE526I ACGT 4 cut(s) 89, 372, 399, 423
Hsp92I GRCGYC 3 cut(s) 89, 309, 423
HspAI GCGC 5 cut(s) 52, 244, 309, 349, 377
KasI GGCGCC 1 cut(s) 308
KroI GCCGGC 2 cut(s) 311, 583
KroNI GCCGGC 2 cut(s) 313, 585
KspI CCGCGG 1 cut(s) 83
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 123, 722
Lsp1109I GCAGC 4 cut(s) 27, 253, 560, 649
LweI GCATC 1 cut(s) 528
MaeI CTAG 1 cut(s) 666
MaeII ACGT 4 cut(s) 89, 372, 399, 423
MaeIII GTNAC 2 cut(s) 443, 627
MboII GAAGA 1 cut(s) 205
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 4 cut(s) 132, 180, 193, 733
MhlI GDGCHC 3 cut(s) 36, 213, 719
MluCI AATT 1 cut(s) 744
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 32, 266
MmeI TCCRAC 2 cut(s) 150, 744
MroNI GCCGGC 2 cut(s) 311, 583
MseI TTAA 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 82, 551
MspR9I CCNGG 8 cut(s) 152, 237, 461, 535, 562, 596, 609, 616
MunI CAATTG 1 cut(s) 744
MvaI CCWGG 2 cut(s) 596, 609
MvnI CGCG 4 cut(s) 54, 82, 246, 377
MwoI GCNNNNNNNGC 4 cut(s) 40, 49, 241, 580
NaeI GCCGGC 2 cut(s) 313, 585
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 6 cut(s) 152, 237, 461, 535, 562, 616
NgoMIV GCCGGC 2 cut(s) 311, 583
NlaIV GGNNCC 6 cut(s) 119, 195, 310, 532, 600, 613
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 443, 627
PaeR7I CTCGAG 1 cut(s) 188
PceI AGGCCT 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 7 cut(s) 342, 360, 369, 381, 396, 429, 432
PdiI GCCGGC 2 cut(s) 313, 585
PfeI GAWTC 2 cut(s) 469, 754
PflMI CCANNNNNTGG 1 cut(s) 770
PfoI TCCNGGA 1 cut(s) 614
PinAI ACCGGT 1 cut(s) 171
PleI GAGTC 2 cut(s) 31, 266
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 31, 266
PshAI GACNNNNGTC 2 cut(s) 254, 441
Psp124BI GAGCTC 2 cut(s) 213, 719
Psp6I CCWGG 2 cut(s) 594, 607
PspEI GGTNACC 1 cut(s) 627
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 2 cut(s) 594, 607
PspN4I GGNNCC 6 cut(s) 119, 195, 310, 532, 600, 613
PspPI GGNCC 4 cut(s) 169, 531, 598, 612
PspXI VCTCGAGB 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 4 cut(s) 132, 180, 193, 733
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 101, 398
RsaNI GTAC 2 cut(s) 100, 397
SacI GAGCTC 2 cut(s) 213, 719
SacII CCGCGG 1 cut(s) 83
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 590
Sau96I GGNCC 4 cut(s) 169, 531, 598, 612
SchI GAGTC 2 cut(s) 32, 266
ScrFI CCNGG 8 cut(s) 152, 237, 461, 535, 562, 596, 609, 616
SduI GDGCHC 3 cut(s) 36, 213, 719
SfaNI GCATC 1 cut(s) 528
SfoI GGCGCC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 83
SinI GGWCC 3 cut(s) 169, 531, 612
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 188, 293
SmoI CTYRAG 2 cut(s) 188, 293
Sse9I AATT 1 cut(s) 744
SseBI AGGCCT 1 cut(s) 359
SspDI GGCGCC 1 cut(s) 308
SspMI CTAG 1 cut(s) 666
SstI GAGCTC 2 cut(s) 213, 719
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 8 cut(s) 150, 235, 459, 533, 560, 594, 607, 614
TaaI ACNGT 2 cut(s) 265, 443
TaiI ACGT 4 cut(s) 92, 375, 402, 426
TaqI TCGA 7 cut(s) 30, 86, 189, 258, 270, 300, 363
TasI AATT 1 cut(s) 744
TauI GCSGC 6 cut(s) 82, 111, 221, 432, 640, 643
TfiI GAWTC 2 cut(s) 469, 754
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TseFI GTSAC 2 cut(s) 443, 627
TseI GCWGC 5 cut(s) 40, 241, 548, 662, 812
Tsp45I GTSAC 2 cut(s) 443, 627
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 770
VpaK11BI GGWCC 3 cut(s) 169, 531, 612
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 66, 86
XspI CTAG 1 cut(s) 666
ZraI GACGTC 2 cut(s) 90, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.