Rh2DG060700

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003015
Physical Location & Seq
Reverse (-)
4473406 .. 4473678
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG060700.1

Sequence Viewer

Length: 273 bp
ATGCAGCCAGTAGCAACAAGAAGCTCGCCAAGAGCGGAGAAGGTCACCGAGAGCGGAGAAGGTCGTGCAAGGACGAGTGCGAGATCTGACCGGAGGATCCGAACTCCAGCGACCTCCGTCAAGACCGTGCTTGACTCGTCTCGCTACTTCGTCCTCAAGATCGAGGATGGCACCGGCAAGCACACCTTCCTCGGCCTTGGGTTCGCCGAGCGCAAAGTGGCGTTCGATTTCAATGTCGCGCTCTCCTATCTAGACAAGTACATCAAAAGATGA

Protein Analysis

90

Amino Acids

10.1

Weight (kDa)

10.32

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 34 - 89 2.6e-20 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AccBSI CCGCTC 2 cut(s) 35, 54
AccII CGCG 1 cut(s) 239
AciI CCGC 2 cut(s) 35, 54
AclWI GGATC 2 cut(s) 91, 104
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 91, 104
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 2 cut(s) 213, 241
AsuHPI GGTGA 1 cut(s) 37
BamHI GGATCC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 251
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 98, 172
BoxI GACNNNNGTC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 190, 196
BsaWI WCCGGW 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 190, 196
BseGI GGATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 91, 174
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 3 cut(s) 83, 96, 159
BspACI CCGC 2 cut(s) 35, 54
BspANI GGCC 1 cut(s) 195
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 2 cut(s) 98, 172
BspPI GGATC 2 cut(s) 91, 104
BspT107I GGYRCC 1 cut(s) 170
BsrBI CCGCTC 2 cut(s) 35, 54
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 190, 196
BssMI GATC 3 cut(s) 83, 96, 159
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 26, 179
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 2 cut(s) 213, 241
BstKTI GATC 3 cut(s) 86, 99, 162
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 83, 96, 159
BstPAI GACNNNNGTC 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 43
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 83, 96
BstYI RGATCY 2 cut(s) 83, 96
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 26, 179
CfoI GCGC 2 cut(s) 213, 241
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 1 cut(s) 259
CviJI RGCY 3 cut(s) 7, 24, 195
CviKI_1 RGCY 3 cut(s) 7, 24, 195
CviQI GTAC 1 cut(s) 259
DpnI GATC 3 cut(s) 85, 98, 161
DpnII GATC 3 cut(s) 83, 96, 159
Eco130I CCWWGG 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 144
FalI AAGNNNNNCTT 2 cut(s) 170, 202
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 212, 240
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 195
HapII CCGG 2 cut(s) 91, 174
HhaI GCGC 2 cut(s) 213, 241
Hin6I GCGC 2 cut(s) 211, 239
HinP1I GCGC 2 cut(s) 211, 239
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 91, 174
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 88, 101
Hpy188III TCNNGA 3 cut(s) 121, 157, 251
HpyAV CCTTC 3 cut(s) 34, 53, 196
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 4, 68
HspAI GCGC 2 cut(s) 211, 239
Kzo9I GATC 3 cut(s) 83, 96, 159
LpnPI CCDG 4 cut(s) 21, 104, 120, 187
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 85, 98, 161
MbiI CCGCTC 2 cut(s) 35, 54
MboI GATC 3 cut(s) 83, 96, 159
MflI RGATCY 2 cut(s) 83, 96
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 5 cut(s) 87, 124, 157, 164, 200
MspI CCGG 2 cut(s) 91, 174
MvnI CGCG 1 cut(s) 239
NdeII GATC 3 cut(s) 83, 96, 159
NlaIV GGNNCC 2 cut(s) 98, 172
NmeAIII GCCGAG 2 cut(s) 171, 232
NmuCI GTSAC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 98, 172
PsuI RGATCY 2 cut(s) 83, 96
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 83, 96, 159
SchI GAGTC 1 cut(s) 128
SetI ASST 5 cut(s) 26, 45, 64, 116, 188
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SsiI CCGC 2 cut(s) 35, 54
SspMI CTAG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 162, 225
TatI WGTACW 1 cut(s) 258
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 106
XbaI TCTAGA 1 cut(s) 250
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.