Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Forward (+)

288087 .. 289066

Gene Structure 980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCTACTTGTAACACGAATCAAAACAACAGGGGAAGACAAACTCACCGAGCGGTACTTATCAAAGTCAGTGATGCAGCCAGCAGCGATGAGAAGCTCGCCGAGAGCGGAGAAGGTCGTGCAAGGACCGGTGCGAGGTCCGACTGGAGGATCCAAATTCCAGCGATCTCCGTCAAGACCGTGCTCGAATCGTCGCGCTACTTCATCCTCAGGATCGAGGATGGCACCAGCGAGCACGCCTTTATCGGCCTCGGGTTTGCCGAGCGCAAAGCAACGTTTGATTTCACCAGGGCGCTCTCCTATCTTGACAAGTATGTCGAGAGACGAAGAGGCTTCGTACGATGCCCGATCGACCTGAATGATCTGGAGCGATTTGATTATCAGCGAGTCGGCACTGCTTCAAGAACTCGTACACCGATCCCAAAGACGCGTCGTTCTTTGCCATTCGCACTCTCTCGAGGTCTGTGTCTCTTGTGGAGGAGAAGAAGACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

165

Amino Acids

18.92

Weight (kDa)

10.93

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	55 - 110	1.6e-16	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	2 cut(s)	53, 108
AccII	CGCG	2 cut(s)	196, 430
AciI	CCGC	2 cut(s)	53, 108
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	4 cut(s)	145, 158, 221, 412
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	3 cut(s)	57, 339, 412
AfiI	CCNNNNNNNGG	2 cut(s)	135, 147
AflIII	ACRYGT	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw21I	GWGCWC	2 cut(s)	186, 237
Alw26I	GTCTC	2 cut(s)	316, 473
AlwI	GGATC	4 cut(s)	145, 158, 221, 412
Ama87I	CYCGRG	2 cut(s)	251, 456
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	77, 84
ApoI	RAATTY	1 cut(s)	156
AsiGI	ACCGGT	1 cut(s)	128
AspLEI	GCGC	3 cut(s)	198, 267, 295
AspS9I	GGNCC	2 cut(s)	126, 138
AsuHPI	GGTGA	2 cut(s)	38, 277
AvaI	CYCGRG	2 cut(s)	251, 456
AvaII	GGWCC	2 cut(s)	126, 138
AxyI	CCTNAGG	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	186, 237
BbvI	GCAGC	2 cut(s)	89, 96
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	316, 473
BfoI	RGCGCY	1 cut(s)	296
BisI	GCNGC	2 cut(s)	78, 85
BlsI	GCNGC	2 cut(s)	79, 86
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	126, 138
BmeT110I	CYCGRG	2 cut(s)	251, 456
BmgT120I	GGNCC	2 cut(s)	126, 138
BmiI	GGNNCC	2 cut(s)	152, 226
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	2 cut(s)	64, 332
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	2 cut(s)	166, 386
BsaJI	CCNNGG	2 cut(s)	250, 288
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 147
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	250, 288
BseGI	GGATG	2 cut(s)	204, 226
BseLI	CCNNNNNNNGG	2 cut(s)	135, 147
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	89, 96
Bsh1236I	CGCG	2 cut(s)	196, 430
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	224
BshTI	ACCGGT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	186, 237
BsiHKCI	CYCGRG	2 cut(s)	251, 456
BsiSI	CCGG	1 cut(s)	129
BsiWI	CGTACG	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	135, 147
BsmAI	GTCTC	2 cut(s)	316, 473
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	2 cut(s)	251, 456
Bsp1286I	GDGCHC	2 cut(s)	186, 237
Bsp143I	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
BspACI	CCGC	2 cut(s)	53, 108
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	2 cut(s)	196, 430
BspLI	GGNNCC	2 cut(s)	152, 226
BspPI	GGATC	4 cut(s)	145, 158, 221, 412
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	2 cut(s)	53, 108
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	250, 288
BssMI	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	82, 99, 233, 237
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	204, 226
BstFNI	CGCG	2 cut(s)	196, 430
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	3 cut(s)	198, 267, 295
BstKTI	GATC	6 cut(s)	153, 168, 216, 351, 364, 420
BstMAI	GTCTC	2 cut(s)	316, 473
BstMBI	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
BstMCI	CGRYCG	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstUI	CGCG	2 cut(s)	196, 430
BstV1I	GCAGC	2 cut(s)	89, 96
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	204, 226
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	76, 393
Cac8I	GCNNGC	4 cut(s)	82, 99, 233, 237
CfoI	GCGC	3 cut(s)	198, 267, 295
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	126, 138
CseI	GACGC	2 cut(s)	419, 436
Csp6I	GTAC	3 cut(s)	56, 338, 411
CspAI	ACCGGT	1 cut(s)	128
CviJI	RGCY	4 cut(s)	80, 97, 249, 333
CviKI_1	RGCY	4 cut(s)	80, 97, 249, 333
CviQI	GTAC	3 cut(s)	56, 338, 411
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	6 cut(s)	152, 167, 215, 350, 363, 419
DpnII	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	126, 138
Eco81I	CCTNAGG	1 cut(s)	209
Eco88I	CYCGRG	2 cut(s)	251, 456
EcoRII	CCWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	316
FaiI	YATR	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	78, 85
FokI	GGATG	2 cut(s)	191, 233
Fsp4HI	GCNGC	2 cut(s)	78, 85
GlaI	GCGC	3 cut(s)	197, 266, 294
GluI	GCNGC	2 cut(s)	78, 85
GsuI	CTGGAG	2 cut(s)	166, 386
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	419, 436
HhaI	GCGC	3 cut(s)	198, 267, 295
Hin6I	GCGC	3 cut(s)	196, 265, 293
HinP1I	GCGC	3 cut(s)	196, 265, 293
HinfI	GANTC	3 cut(s)	19, 188, 387
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	38, 277
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	7 cut(s)	175, 211, 305, 319, 365, 402, 456
Hpy8I	GTNNAC	1 cut(s)	413
Hpy99I	CGWCG	2 cut(s)	196, 435
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	77, 122
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	275
HspAI	GCGC	3 cut(s)	196, 265, 293
Kzo9I	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	89, 96
LweI	GCATC	2 cut(s)	64, 332
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	6 cut(s)	152, 167, 215, 350, 363, 419
MbiI	CCGCTC	2 cut(s)	53, 108
MboI	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
MboII	GAAGA	3 cut(s)	48, 339, 495
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	186, 237
MluCI	AATT	1 cut(s)	156
MluI	ACGCGT	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	129, 141, 211, 218, 260, 323, 452, 471
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	2 cut(s)	196, 430
NdeII	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
NlaIV	GGNNCC	2 cut(s)	152, 226
NmeAIII	GCCGAG	2 cut(s)	127, 286
PaeR7I	CTCGAG	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	19, 188
Pfl23II	CGTACG	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	79, 86
Ple19I	CGATCG	1 cut(s)	351
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Psp1406I	AACGTT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspLI	CGTACG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	152, 226
PspPI	GGNCC	2 cut(s)	126, 138
PsuI	RGATCY	1 cut(s)	150
PvuI	CGATCG	1 cut(s)	351
RsaI	GTAC	3 cut(s)	57, 339, 412
RsaNI	GTAC	3 cut(s)	56, 338, 411
SatI	GCNGC	2 cut(s)	78, 85
Sau3AI	GATC	6 cut(s)	150, 165, 213, 348, 361, 417
Sau96I	GGNCC	2 cut(s)	126, 138
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	2 cut(s)	186, 237
SetI	ASST	6 cut(s)	99, 118, 140, 278, 357, 463
SfaNI	GCATC	2 cut(s)	64, 332
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	126, 138
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	53, 108
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	5 cut(s)	186, 216, 318, 351, 457
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	19, 188
TscAI	CASTG	2 cut(s)	76, 400
TseI	GCWGC	2 cut(s)	77, 84
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	76, 400
VpaK11BI	GGWCC	2 cut(s)	126, 138
XapI	RAATTY	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.