Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Forward (+)

24621074 .. 24639725

Gene Structure 18652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG242400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATCCGAACTCCAGCAACCTTCATCGAGACCGTGTTCAACTCATCGAGCTACTTCGTCCTTAAGATTGAGGACGGCACCGGTAAGCACGTCTTCATTGGCCTCGGGTTTTCCGAGCGCAATGAGGCGTTCTATTTCAACGTCACGCTCTCCGATCATGACGATGGGACTTCGTCGGTGTCGTCCTCTGATGAGCAGCCAATTGTGCACGACCCCAGTCAATTTGGGGCTTTCAGCAAATGGAGAAGCATATCAAGACACTCAGTGTCCTATCTCACTGCTTGGAGGTGCAGTGTTTTGATACAAAATTGTTTGACTAATCCAGCTATTTTCAAGTGGTTTAGGTGGAAATACAGATTAGATTCTCCACCTCAGACTGAAGAGCTATGCTCTCAAGTACAGTTTATCTCATTCTCTGATGTTGAGTACCTGGAATCCGCCGTTTTCCTGTGGGCAAGGGTTAGGACTAGGCTGCAAAGAGGTTTTTGGCGGATGACTCTTGGCTTCGTGTTTGGCGGTGCTTTGATCGAAGAACATGCGGAGGCTCTTGACGGAGGATCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

188

Amino Acids

21.56

Weight (kDa)

5.72

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	5 - 62	1.2e-15	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	4 cut(s)	438, 490, 516, 539
AclWI	GGATC	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	399, 428
AflII	CTTAAG	1 cut(s)	62
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	40, 139, 334
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	51, 326, 385
AluI	AGCT	3 cut(s)	51, 326, 385
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	196, 472
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	208, 459
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	91, 425
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	468
BfrI	CTTAAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	197, 473
BlsI	GCNGC	2 cut(s)	198, 474
Bme1390I	CCNGG	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	431
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuEI	CTTGAG	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	276, 386
BseNI	ACTGG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	208, 459
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	3, 154, 525, 557
BspACI	CCGC	4 cut(s)	438, 490, 516, 539
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	275, 385
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	565
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	4 cut(s)	3, 154, 525, 557
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	34, 402
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	262, 372
BstF5I	GGATG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	4 cut(s)	6, 157, 528, 560
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	3, 154, 525, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	539
BstPAI	GACNNNNGTC	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	208, 459
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	498
BtsI	GCAGTG	2 cut(s)	276, 298
BtsIMutI	CAGTG	3 cut(s)	270, 276, 298
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	398, 427
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	2 cut(s)	158, 536
CviJI	RGCY	9 cut(s)	51, 102, 199, 230, 326, 385, 472, 504, 545
CviKI_1	RGCY	9 cut(s)	51, 102, 199, 230, 326, 385, 472, 504, 545
CviQI	GTAC	2 cut(s)	398, 427
DdeI	CTNAG	2 cut(s)	262, 372
DpnI	GATC	4 cut(s)	5, 156, 527, 559
DpnII	GATC	4 cut(s)	3, 154, 525, 557
DraIII	CACNNNGTG	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	2 cut(s)	427, 505
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	161, 539
FaiI	YATR	4 cut(s)	159, 251, 388, 537
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	157, 535
Fnu4HI	GCNGC	2 cut(s)	197, 473
FokI	GGATG	1 cut(s)	505
Fsp4HI	GCNGC	2 cut(s)	197, 473
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	197, 473
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	161, 539
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	362, 434, 496
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	6 cut(s)	8, 115, 154, 190, 375, 418
Hpy188III	TCNNGA	4 cut(s)	28, 158, 255, 548
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	34, 402
HpyCH4IV	ACGT	2 cut(s)	90, 141
HpyCH4V	TGCA	3 cut(s)	208, 291, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	262, 372
HpySE526I	ACGT	2 cut(s)	90, 141
Hsp92II	CATG	2 cut(s)	161, 539
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	3, 154, 525, 557
LguI	GCTCTTC	1 cut(s)	375
LpnPI	CCDG	7 cut(s)	27, 94, 229, 336, 416, 443, 461
Lsp1109I	GCAGC	2 cut(s)	208, 459
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	90, 141
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	4 cut(s)	5, 156, 527, 559
MboI	GATC	4 cut(s)	3, 154, 525, 557
MboII	GAAGA	3 cut(s)	85, 392, 542
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	3 cut(s)	201, 221, 307
MlyI	GAGTC	1 cut(s)	490
MnlI	CCTC	9 cut(s)	64, 113, 118, 196, 279, 381, 473, 535, 548
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	4 cut(s)	3, 154, 525, 557
NlaIII	CATG	2 cut(s)	161, 539
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	539
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 179
PfeI	GAWTC	2 cut(s)	362, 434
PflFI	GACNNNGTC	1 cut(s)	172
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	198, 474
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	399, 428
RsaNI	GTAC	2 cut(s)	398, 427
RseI	CAYNNNNRTG	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	197, 473
Sau3AI	GATC	4 cut(s)	3, 154, 525, 557
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	62, 393
SmoI	CTYRAG	2 cut(s)	62, 393
Sse9I	AATT	3 cut(s)	201, 221, 307
SsiI	CCGC	4 cut(s)	438, 490, 516, 539
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	34, 402
TaiI	ACGT	2 cut(s)	93, 144
TaqI	TCGA	3 cut(s)	27, 47, 528
TasI	AATT	3 cut(s)	201, 221, 307
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	362, 434
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	3 cut(s)	270, 283, 298
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	196, 472
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	13, 85
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	3 cut(s)	270, 283, 298
Tth111I	GACNNNGTC	1 cut(s)	172
Vha464I	CTTAAG	1 cut(s)	62
VneI	GTGCAC	1 cut(s)	206
XceI	RCATGY	1 cut(s)	539
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.