Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Forward (+)

25277729 .. 25278001

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG259400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTATTTCGAGGAAGAGGAGGAGGCCTTTGAGCACACACTCCTAGTAGTCCATGAGGTCTCGGTCTATAAAATTCCACCACGGTCAACGTCGGGTGGTGACAAGTCCAGTGAGTGGCTCCAGTCTGACAGGATATGGTCAGGAAGATTGCGTGTTGTGTCGTGCAAGGAACAGTGTGAGATCCGATTGGAGGATCCAAGCTCCAGTGAGCTCTTTGCAGCTTGCTTTGTTTTAACCAGGCCAGCGCGAGACCTCAGTGGAGATGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

90

Amino Acids

10.2

Weight (kDa)

4.72

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	10 - 78	1.8e-20	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccII	CGCG	1 cut(s)	247
AclWI	GGATC	3 cut(s)	175, 188, 201
AcsI	RAATTY	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	114, 190
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	201, 211, 221
AluI	AGCT	3 cut(s)	201, 211, 221
Alw21I	GWGCWC	2 cut(s)	36, 213
Alw26I	GTCTC	2 cut(s)	64, 243
AlwI	GGATC	3 cut(s)	175, 188, 201
AoxI	GGCC	2 cut(s)	24, 239
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	36, 213
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	64, 243
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	119, 195
BmrFI	CCNGG	1 cut(s)	238
BpmI	CTGGAG	2 cut(s)	104, 187
BsaI	GGTCTC	2 cut(s)	64, 243
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 190
Bse1I	ACTGG	3 cut(s)	108, 121, 204
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	114, 190
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	3 cut(s)	108, 121, 204
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	26, 241
BsiHKAI	GWGCWC	2 cut(s)	36, 213
BslI	CCNNNNNNNGG	2 cut(s)	114, 190
BsmAI	GTCTC	2 cut(s)	64, 243
BsnI	GGCC	2 cut(s)	26, 241
Bso31I	GGTCTC	2 cut(s)	64, 243
Bsp1286I	GDGCHC	2 cut(s)	36, 213
Bsp143I	GATC	2 cut(s)	180, 193
BspANI	GGCC	2 cut(s)	26, 241
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	119, 195
BspPI	GGATC	3 cut(s)	175, 188, 201
BspTNI	GGTCTC	2 cut(s)	64, 243
BsrI	ACTGG	3 cut(s)	108, 121, 204
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	2 cut(s)	180, 193
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	84, 174
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	223, 243
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	183, 196
BstMAI	GTCTC	2 cut(s)	64, 243
BstMBI	GATC	2 cut(s)	180, 193
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	180, 193
BstYI	RGATCY	2 cut(s)	180, 193
BsuRI	GGCC	2 cut(s)	26, 241
BtgI	CCRYGG	1 cut(s)	80
BtsIMutI	CAGTG	4 cut(s)	115, 179, 211, 262
Cac8I	GCNNGC	2 cut(s)	223, 243
CfoI	GCGC	1 cut(s)	247
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	6 cut(s)	26, 118, 201, 211, 221, 241
CviKI_1	RGCY	6 cut(s)	26, 118, 201, 211, 221, 241
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	182, 195
DpnII	GATC	2 cut(s)	180, 193
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	2 cut(s)	64, 243
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	1 cut(s)	56
FaiI	YATR	3 cut(s)	54, 69, 136
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	104, 187
HaeIII	GGCC	2 cut(s)	26, 241
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	127, 185
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	84, 174
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	165, 218
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	180, 193
LmnI	GCTCC	2 cut(s)	123, 206
LpnPI	CCDG	8 cut(s)	115, 121, 126, 134, 217, 223, 250, 255
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	182, 195
MboI	GATC	2 cut(s)	180, 193
MboII	GAAGA	2 cut(s)	26, 156
MflI	RGATCY	2 cut(s)	180, 193
MhlI	GDGCHC	2 cut(s)	36, 213
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	7 cut(s)	4, 10, 13, 16, 49, 184, 263
MseI	TTAA	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	247
NdeII	GATC	2 cut(s)	180, 193
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	119, 195
NmuCI	GTSAC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	119, 195
PsuI	RGATCY	2 cut(s)	180, 193
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	180, 193
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	36, 213
SetI	ASST	6 cut(s)	60, 92, 203, 213, 223, 255
Sse9I	AATT	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	84, 174
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	9
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	4 cut(s)	115, 179, 211, 262
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	98
TspRI	CASTG	4 cut(s)	115, 179, 211, 262
Van91I	CCANNNNNTGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	72
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.