Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

49430541 .. 49431225

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCTGTCAGCAGCTGGGCTATCCGGGTCGGCAAAGCCCAAATCGCCGGCTTTAAGCCTGGCCCCGCCACCCGGGTCCGGGAAACTCAGGTCACCTCTGCCGCCGCCTCCAAATGATCCTGTTGCTGCTAGGATCAGCTCAGGTGGTGTCAAACCTCCACAGGATAGTGCAAGAAAGAGCTCCGACCCGTTATCGGATCTTTCGCCAATTGAGAGGAATCTGCCTCCAGCAAATGGATCAGGATCATCCACAAAGACAAATGCAGTAGGATGGGCAGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

94

Amino Acids

9.29

Weight (kDa)

10.28

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	3 cut(s)	65, 101, 104
AclWI	GGATC	5 cut(s)	110, 140, 204, 244, 250
AfiI	CCNNNNNNNGG	5 cut(s)	71, 77, 78, 193, 233
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	4 cut(s)	14, 138, 180, 278
AluI	AGCT	4 cut(s)	14, 138, 180, 278
Alw21I	GWGCWC	1 cut(s)	182
AlwI	GGATC	5 cut(s)	110, 140, 204, 244, 250
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	11, 125, 275
AspS9I	GGNCC	2 cut(s)	61, 75
AsuC2I	CCSGG	4 cut(s)	25, 72, 73, 79
AsuHPI	GGTGA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	23, 112
BccI	CCATC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	4 cut(s)	25, 72, 73, 79
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	5 cut(s)	12, 101, 104, 126, 276
BlsI	GCNGC	5 cut(s)	13, 102, 105, 127, 277
Bme1390I	CCNGG	5 cut(s)	25, 59, 72, 73, 79
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	61, 75
BmiI	GGNNCC	2 cut(s)	63, 76
BmrFI	CCNGG	5 cut(s)	25, 59, 72, 73, 79
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	139
BpuMI	CCSGG	4 cut(s)	25, 72, 73, 79
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 77, 78, 193, 233
Bse118I	RCCGGY	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	245, 275
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	5 cut(s)	71, 77, 78, 193, 233
BseMII	CTCAG	2 cut(s)	100, 153
BseXI	GCAGC	2 cut(s)	23, 112
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	4 cut(s)	24, 47, 72, 78
BslI	CCNNNNNNNGG	5 cut(s)	71, 77, 78, 193, 233
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	5 cut(s)	115, 132, 196, 236, 242
BspACI	CCGC	3 cut(s)	65, 101, 104
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	99, 152
BspLI	GGNNCC	2 cut(s)	63, 76
BspPI	GGATC	5 cut(s)	110, 140, 204, 244, 250
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	5 cut(s)	115, 132, 196, 236, 242
Bst2UI	CCWGG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	86, 139
BstEII	GGTNACC	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	245, 275
BstKTI	GATC	5 cut(s)	118, 135, 199, 239, 245
BstMBI	GATC	5 cut(s)	115, 132, 196, 236, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	90
BstSCI	CCNGG	5 cut(s)	23, 57, 70, 71, 77
BstV1I	GCAGC	2 cut(s)	23, 112
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	245, 275
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	61, 75
Cfr9I	CCCGGG	1 cut(s)	71
CviJI	RGCY	9 cut(s)	14, 19, 37, 50, 57, 62, 138, 180, 278
CviKI_1	RGCY	9 cut(s)	14, 19, 37, 50, 57, 62, 138, 180, 278
DdeI	CTNAG	2 cut(s)	86, 139
DpnI	GATC	5 cut(s)	117, 134, 198, 238, 244
DpnII	GATC	5 cut(s)	115, 132, 196, 236, 242
Ecl136II	GAGCTC	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	182
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	12, 101, 104, 126, 276
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	5 cut(s)	12, 101, 104, 126, 276
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	5 cut(s)	12, 101, 104, 126, 276
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	4 cut(s)	24, 47, 72, 78
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	4 cut(s)	24, 47, 72, 78
HphI	GGTGA	1 cut(s)	84
Hpy188I	TCNGA	3 cut(s)	184, 196, 284
Hpy188III	TCNNGA	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	170, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	86, 139
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	115, 132, 196, 236, 242
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	2 cut(s)	23, 112
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	5 cut(s)	117, 134, 198, 238, 244
MboI	GATC	5 cut(s)	115, 132, 196, 236, 242
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	5 cut(s)	105, 117, 165, 207, 234
MroNI	GCCGGC	1 cut(s)	46
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	4 cut(s)	24, 47, 72, 78
MspR9I	CCNGG	5 cut(s)	25, 59, 72, 73, 79
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	43
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	4 cut(s)	25, 72, 73, 79
NdeII	GATC	5 cut(s)	115, 132, 196, 236, 242
NgoMIV	GCCGGC	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	63, 76
NmuCI	GTSAC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	5 cut(s)	13, 102, 105, 127, 277
Psp124BI	GAGCTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	63, 76
PspPI	GGNCC	2 cut(s)	61, 75
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	5 cut(s)	12, 101, 104, 126, 276
Sau3AI	GATC	5 cut(s)	115, 132, 196, 236, 242
Sau96I	GGNCC	2 cut(s)	61, 75
ScrFI	CCNGG	5 cut(s)	25, 59, 72, 73, 79
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	8 cut(s)	16, 92, 97, 140, 145, 157, 182, 280
SinI	GGWCC	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	3 cut(s)	65, 101, 104
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	5 cut(s)	23, 57, 70, 71, 77
TasI	AATT	1 cut(s)	207
TauI	GCSGC	2 cut(s)	103, 106
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	3 cut(s)	11, 125, 275
Tsp45I	GTSAC	1 cut(s)	90
TspMI	CCCGGG	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	75
XmaI	CCCGGG	1 cut(s)	71
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.