Rw6G002890

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003015
Physical Location & Seq
Forward (+)
4724114 .. 4726480
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002890.1

Sequence Viewer

Length: 633 bp
ATGAGGATTCTGAAGCTGCTGCTGGTGTGCGAGGTCGCGGTCTACAAAACCCCACTGCAGTCGACATCCGGCAGGTACAATTGCGGCGAGTGGCTCAAGTCCGACAAGATCTGGATGAGTCAGCTCTGGGTAAGGATCCAAACTCCAACGACCTCCGTCGAGACCATGCTCAACTTGTCACGCTTCTTCGTCCTTAAGATCAAGGAAGGCACCAGCAAGCACGCCTTCGTTGGCCTCCAGTTCGTTGAGCACAACGAGTCATTCTATTTCAACGTCGCGCTCTCAGATCATGATGACCTTCCAGACACAAATCCAGGTCCGCCGTACACGACCACGACTAGGGACGAGGTTCCCTGCCTCCATTGCAGGCTGACAACAGCTCGACCTGCTCACCACCACGTCCACCGTACTACCTCTATCCACCACCATAATCGGAAAGCTATTCCACCATCCGATCCTCCAATAGCTTTGAGAATCACAATAATAACTCCACTGCAAAGAAGAGAAACGAGGCAAACAACCTTCGCCGCTAACAACCAAATCCCCACCACGCCATCAGAGTCACCCAAGTCCTCCATGAATATGGAGGAAGTTTCAGAAGCAAACCGCGAGGGCGGCCACTCTCAACCCTAG

Protein Analysis

210

Amino Acids

23.89

Weight (kDa)

8.72

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 47 - 99 8.2e-12 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 63, 394
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 2 cut(s) 42, 62
AccII CGCG 3 cut(s) 38, 278, 609
AciI CCGC 6 cut(s) 38, 84, 320, 528, 607, 615
AclWI GGATC 3 cut(s) 130, 143, 449
AcoI YGGCCR 1 cut(s) 616
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 3 cut(s) 77, 326, 409
AfiI CCNNNNNNNGG 1 cut(s) 339
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 271
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 5 cut(s) 16, 124, 380, 440, 467
AluI AGCT 5 cut(s) 16, 124, 380, 440, 467
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 130, 143, 449
AoxI GGCC 2 cut(s) 232, 616
ApeKI GCWGC 2 cut(s) 16, 19
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 383, 555
AvaII GGWCC 1 cut(s) 317
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 3, 6
BccI CCATC 2 cut(s) 457, 562
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 2 cut(s) 339, 631
BfmI CTRYAG 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 194
BfuAI ACCTGC 2 cut(s) 63, 394
BglII AGATCT 1 cut(s) 108
BisI GCNGC 5 cut(s) 17, 20, 85, 528, 616
BlsI GCNGC 5 cut(s) 18, 21, 86, 529, 617
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 317
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 3 cut(s) 137, 211, 351
BmrFI CCNGG 1 cut(s) 315
BoxI GACNNNNGTC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 65, 120, 449
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 3, 6
Bsh1236I CGCG 3 cut(s) 38, 278, 609
BshFI GGCC 2 cut(s) 234, 618
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 234, 618
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 5 cut(s) 108, 135, 198, 286, 454
BspACI CCGC 6 cut(s) 38, 84, 320, 528, 607, 615
BspANI GGCC 2 cut(s) 234, 618
BspCNI CTCAG 1 cut(s) 296
BspFNI CGCG 3 cut(s) 38, 278, 609
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 137, 211, 351
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 2 cut(s) 63, 394
BspPI GGATC 3 cut(s) 130, 143, 449
BspT107I GGYRCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 238
BssMI GATC 5 cut(s) 108, 135, 198, 286, 454
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 218, 222, 368
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 3 cut(s) 65, 120, 449
BstFNI CGCG 3 cut(s) 38, 278, 609
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 5 cut(s) 111, 138, 201, 289, 457
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 5 cut(s) 108, 135, 198, 286, 454
BstMWI GCNNNNNNNGC 3 cut(s) 363, 386, 615
BstNI CCWGG 1 cut(s) 315
BstPAI GACNNNNGTC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 56
BstUI CGCG 3 cut(s) 38, 278, 609
BstV1I GCAGC 2 cut(s) 3, 6
BstX2I RGATCY 2 cut(s) 108, 135
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 108, 135
BsuRI GGCC 2 cut(s) 234, 618
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 65, 120, 449
BtsI GCAGTG 2 cut(s) 53, 491
BtsIMutI CAGTG 2 cut(s) 53, 491
BveI ACCTGC 2 cut(s) 63, 394
Cac8I GCNNGC 3 cut(s) 218, 222, 368
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 76, 325, 408
CviAII CATG 3 cut(s) 166, 290, 577
CviJI RGCY 9 cut(s) 16, 94, 124, 234, 370, 380, 440, 467, 618
CviKI_1 RGCY 9 cut(s) 16, 94, 124, 234, 370, 380, 440, 467, 618
CviQI GTAC 3 cut(s) 76, 325, 408
DdeI CTNAG 1 cut(s) 283
DpnI GATC 5 cut(s) 110, 137, 200, 288, 456
DpnII GATC 5 cut(s) 108, 135, 198, 286, 454
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
EciI GGCGGA 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 3 cut(s) 169, 293, 580
FaiI YATR 5 cut(s) 167, 291, 429, 578, 584
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 356
FatI CATG 3 cut(s) 165, 289, 576
FblI GTMKAC 2 cut(s) 42, 62
Fnu4HI GCNGC 5 cut(s) 17, 20, 85, 528, 616
FokI GGATG 3 cut(s) 52, 127, 436
Fsp4HI GCNGC 5 cut(s) 17, 20, 85, 528, 616
FspBI CTAG 2 cut(s) 339, 631
GlaI GCGC 1 cut(s) 279
GluI GCNGC 5 cut(s) 17, 20, 85, 528, 616
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 234, 618
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 280
Hin1II CATG 3 cut(s) 169, 293, 580
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 5 cut(s) 7, 118, 257, 474, 560
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 383, 555
Hpy166II GTNNAC 4 cut(s) 43, 63, 327, 403
Hpy188I TCNGA 7 cut(s) 12, 103, 286, 435, 454, 559, 598
Hpy188III TCNNGA 4 cut(s) 112, 160, 290, 302
Hpy8I GTNNAC 4 cut(s) 43, 63, 327, 403
Hpy99I CGWCG 2 cut(s) 161, 278
HpyAV CCTTC 4 cut(s) 200, 235, 308, 532
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 2 cut(s) 273, 399
HpyCH4V TGCA 3 cut(s) 58, 366, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 386, 615
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 2 cut(s) 273, 399
Hsp92II CATG 3 cut(s) 169, 293, 580
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 5 cut(s) 108, 135, 198, 286, 454
Lsp1109I GCAGC 2 cut(s) 3, 6
MaeI CTAG 2 cut(s) 339, 631
MaeII ACGT 2 cut(s) 273, 399
MaeIII GTNAC 2 cut(s) 177, 561
MalI GATC 5 cut(s) 110, 137, 200, 288, 456
MboI GATC 5 cut(s) 108, 135, 198, 286, 454
MboII GAAGA 2 cut(s) 178, 513
MfeI CAATTG 1 cut(s) 79
MflI RGATCY 2 cut(s) 108, 135
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 79
MlyI GAGTC 3 cut(s) 127, 266, 569
MmeI TCCRAC 2 cut(s) 126, 170
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 581
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 3 cut(s) 38, 278, 609
MwoI GCNNNNNNNGC 3 cut(s) 363, 386, 615
NdeII GATC 5 cut(s) 108, 135, 198, 286, 454
NlaIII CATG 3 cut(s) 169, 293, 580
NlaIV GGNNCC 3 cut(s) 137, 211, 351
NmuCI GTSAC 2 cut(s) 177, 561
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 7, 474
PkrI GCNGC 5 cut(s) 18, 21, 86, 529, 617
PleI GAGTC 3 cut(s) 126, 265, 568
PpsI GAGTC 3 cut(s) 126, 265, 568
PshAI GACNNNNGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 137, 211, 351
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 60
PsuI RGATCY 2 cut(s) 108, 135
RsaI GTAC 3 cut(s) 77, 326, 409
RsaNI GTAC 3 cut(s) 76, 325, 408
RseI CAYNNNNRTG 1 cut(s) 581
SalI GTCGAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 5 cut(s) 17, 20, 85, 528, 616
Sau3AI GATC 5 cut(s) 108, 135, 198, 286, 454
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 3 cut(s) 127, 266, 569
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 95, 194
SmoI CTYRAG 2 cut(s) 95, 194
Sse9I AATT 1 cut(s) 79
SsiI CCGC 6 cut(s) 38, 84, 320, 528, 607, 615
SspMI CTAG 2 cut(s) 339, 631
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 2 cut(s) 276, 402
TaqI TCGA 3 cut(s) 62, 159, 382
TasI AATT 1 cut(s) 79
TauI GCSGC 3 cut(s) 87, 530, 618
TfiI GAWTC 2 cut(s) 7, 474
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 60, 498
TseFI GTSAC 2 cut(s) 177, 561
TseI GCWGC 2 cut(s) 16, 19
Tsp45I GTSAC 2 cut(s) 177, 561
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 2 cut(s) 60, 498
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 317
XmiI GTMKAC 2 cut(s) 42, 62
XspI CTAG 2 cut(s) 339, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.