RchiOBHm_Chr6g0287711

Protein of unknown function (DUF1681)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003015
Physical Location & Seq
Reverse (-)
51041021 .. 51042946
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25811

Sequence Viewer

Length: 828 bp
ATGTCGTTTGAGGACGAGGAGGAGTCGTTCGAGCACACGCTGCTGGTGGTGCGCGAGGTCGCCGTCTACAAAATCCCGCCGCGGTCGACGTCCGGCGGGTACAAGTGCGGCGAGTGGCTCCAGTCCGACAAGATCTGGACGGGTCGCCTCCGGGTCGTGTCCTGCAAGGACCGCTGCGAGATCCGGCTCGAGGATCCCAACTCCAGCGAGCTCTTCGCCGCCTGCTTCGTCCCGCCGGGGCAGCGCGAGACCTCCGTCGAGACCGTCCTCGACTCCTCCCGCTACTTCGTCCTCAAGATCGAGGACGGCACCGGCAAGCACGCCTTCATCGGCCTCGGGTTCGCCGAGCGCAACGAGGCCTTCGATTTCAACGTCGCGCTCTCCGATCACGACAAGTACGTCAAGCGAGAGACTGATAATGACGTCGGCGGCGGCGGCGACGACGACAGTCACATTGAGGTTCACCCGGCGGTGAATCACAGATTGAAGGAAGGTGAGACGATAAGGATAAATGTGAAGCCGAAGCCGACGAGTGGGACCGGGATGCTGTCAGCAGCTGGGCTATCCGGGTCGGCAAAGCCCAAATCGCCGGCTTTAAGCCTGGCCCCGCCACCCGGGTCCGGGAAACTCAGGTCACCTCTGCCGCCGCCTCCAAATGATCCTGTTGCTGCTAGGATCAGCTCTGGTGGTGTCAAACCTCCACAGGATAATGCAAGAAAGAGCTCCGACCCGTTTTCGGATCTTTCTCAAATTGAGAGGAATCTGCCTCCAGCAAATGGATCAGGATCATCCACAAAGACAAATGCAGTAGGATGGGCAGCTTTCTGA

Protein Analysis

275

Amino Acids

29.61

Weight (kDa)

5.76

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 10 - 173 1.2e-57 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AatII GACGTC 2 cut(s) 92, 426
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 776
AccI GTMKAC 2 cut(s) 66, 86
AccII CGCG 4 cut(s) 54, 82, 246, 377
AclWI GGATC 8 cut(s) 175, 188, 201, 653, 683, 747, 787, 793
AcyI GRCGYC 2 cut(s) 89, 423
AfaI GTAC 2 cut(s) 101, 398
AfiI CCNNNNNNNGG 7 cut(s) 190, 533, 614, 620, 621, 736, 776
AgsI TTSAA 2 cut(s) 370, 487
AjnI CCWGG 1 cut(s) 600
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 5 cut(s) 211, 557, 681, 723, 821
AluI AGCT 5 cut(s) 211, 557, 681, 723, 821
Alw21I GWGCWC 3 cut(s) 36, 213, 725
Alw26I GTCTC 4 cut(s) 242, 254, 404, 491
AlwI GGATC 8 cut(s) 175, 188, 201, 653, 683, 747, 787, 793
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 3 cut(s) 188, 335, 614
AoxI GGCC 3 cut(s) 331, 357, 603
ApeKI GCWGC 6 cut(s) 40, 174, 241, 554, 668, 818
AspLEI GCGC 4 cut(s) 54, 246, 351, 379
AspS9I GGNCC 4 cut(s) 169, 537, 604, 618
AsuC2I CCSGG 8 cut(s) 152, 237, 467, 541, 568, 615, 616, 622
AsuHPI GGTGA 4 cut(s) 455, 484, 506, 627
AvaI CYCGRG 3 cut(s) 188, 335, 614
AvaII GGWCC 3 cut(s) 169, 537, 618
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 213, 725
Bbv12I GWGCWC 3 cut(s) 36, 213, 725
BbvI GCAGC 5 cut(s) 27, 161, 253, 566, 655
BccI CCATC 1 cut(s) 807
BceAI ACGGC 2 cut(s) 47, 322
BciT130I CCWGG 1 cut(s) 602
BcnI CCSGG 8 cut(s) 152, 237, 467, 541, 568, 615, 616, 622
BcoDI GTCTC 4 cut(s) 242, 254, 404, 491
BfaI CTAG 1 cut(s) 672
BglII AGATCT 1 cut(s) 132
Bme1390I CCNGG 9 cut(s) 152, 237, 467, 541, 568, 602, 615, 616, 622
Bme18I GGWCC 3 cut(s) 169, 537, 618
BmeT110I CYCGRG 3 cut(s) 188, 335, 614
BmgT120I GGNCC 4 cut(s) 169, 537, 604, 618
BmiI GGNNCC 6 cut(s) 119, 195, 310, 538, 606, 619
BmrFI CCNGG 9 cut(s) 152, 237, 467, 541, 568, 602, 615, 616, 622
BmsI GCATC 1 cut(s) 534
BoxI GACNNNNGTC 2 cut(s) 254, 447
BpmI CTGGAG 3 cut(s) 104, 187, 753
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 8 cut(s) 152, 237, 467, 541, 568, 615, 616, 622
BsaBI GATNNNNATC 1 cut(s) 784
BsaHI GRCGYC 2 cut(s) 89, 423
BsaI GGTCTC 2 cut(s) 242, 254
BsaJI CCNNGG 4 cut(s) 80, 236, 334, 614
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 7 cut(s) 190, 533, 614, 620, 621, 736, 776
Bse118I RCCGGY 2 cut(s) 311, 589
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 784
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 4 cut(s) 80, 236, 334, 614
BseGI GGATG 3 cut(s) 549, 788, 818
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 7 cut(s) 190, 533, 614, 620, 621, 736, 776
BseMII CTCAG 1 cut(s) 643
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 3 cut(s) 32, 35, 265
BseXI GCAGC 5 cut(s) 27, 161, 253, 566, 655
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 4 cut(s) 54, 82, 246, 377
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 333, 359, 605
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 3 cut(s) 36, 213, 725
BsiHKCI CYCGRG 3 cut(s) 188, 335, 614
BslFI GGGAC 2 cut(s) 215, 550
BslI CCNNNNNNNGG 7 cut(s) 190, 533, 614, 620, 621, 736, 776
BsmAI GTCTC 4 cut(s) 242, 254, 404, 491
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 2 cut(s) 215, 550
BsnI GGCC 3 cut(s) 333, 359, 605
Bso31I GGTCTC 2 cut(s) 242, 254
BsoBI CYCGRG 3 cut(s) 188, 335, 614
Bsp1286I GDGCHC 3 cut(s) 36, 213, 725
BspANI GGCC 3 cut(s) 333, 359, 605
BspCNI CTCAG 1 cut(s) 642
BspFNI CGCG 4 cut(s) 54, 82, 246, 377
BspLI GGNNCC 6 cut(s) 119, 195, 310, 538, 606, 619
BspPI GGATC 8 cut(s) 175, 188, 201, 653, 683, 747, 787, 793
BspQI GCTCTTC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 2 cut(s) 242, 254
BsrFI RCCGGY 2 cut(s) 311, 589
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 2 cut(s) 311, 589
BssECI CCNNGG 4 cut(s) 80, 236, 334, 614
BssNI GRCGYC 2 cut(s) 89, 423
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 2 cut(s) 265, 449
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 2 cut(s) 89, 423
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 5 cut(s) 209, 223, 317, 321, 591
BstDEI CTNAG 1 cut(s) 629
BstDSI CCRYGG 1 cut(s) 80
BstEII GGTNACC 1 cut(s) 633
BstF5I GGATG 3 cut(s) 549, 788, 818
BstFNI CGCG 4 cut(s) 54, 82, 246, 377
BstHHI GCGC 4 cut(s) 54, 246, 351, 379
BstMAI GTCTC 4 cut(s) 242, 254, 404, 491
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 6 cut(s) 40, 49, 171, 241, 435, 586
BstNI CCWGG 1 cut(s) 602
BstPAI GACNNNNGTC 2 cut(s) 254, 447
BstPI GGTNACC 1 cut(s) 633
BstSCI CCNGG 9 cut(s) 150, 235, 465, 539, 566, 600, 613, 614, 620
BstUI CGCG 4 cut(s) 54, 82, 246, 377
BstV1I GCAGC 5 cut(s) 27, 161, 253, 566, 655
BstX2I RGATCY 4 cut(s) 132, 180, 193, 739
BstYI RGATCY 4 cut(s) 132, 180, 193, 739
BsuRI GGCC 3 cut(s) 333, 359, 605
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 3 cut(s) 549, 788, 818
Cac8I GCNNGC 5 cut(s) 209, 223, 317, 321, 591
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 4 cut(s) 54, 246, 351, 379
Cfr10I RCCGGY 2 cut(s) 311, 589
Cfr13I GGNCC 4 cut(s) 169, 537, 604, 618
Cfr42I CCGCGG 1 cut(s) 83
Cfr9I CCCGGG 1 cut(s) 614
Csp6I GTAC 2 cut(s) 100, 397
CviQI GTAC 2 cut(s) 100, 397
DdeI CTNAG 1 cut(s) 629
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 2 cut(s) 211, 723
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 2 cut(s) 213, 725
Eco31I GGTCTC 2 cut(s) 242, 254
Eco47I GGWCC 3 cut(s) 169, 537, 618
Eco53kI GAGCTC 2 cut(s) 211, 723
Eco88I CYCGRG 3 cut(s) 188, 335, 614
Eco91I GGTNACC 1 cut(s) 633
EcoICRI GAGCTC 2 cut(s) 211, 723
EcoO65I GGTNACC 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 213, 725
Esp3I CGTCTC 1 cut(s) 491
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 2 cut(s) 215, 550
FauI CCCGC 5 cut(s) 84, 89, 240, 287, 615
FblI GTMKAC 2 cut(s) 66, 86
FokI GGATG 2 cut(s) 556, 775
FriOI GRGCYC 2 cut(s) 213, 725
FspBI CTAG 1 cut(s) 672
GlaI GCGC 4 cut(s) 53, 245, 350, 378
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 3 cut(s) 104, 187, 753
HaeIII GGCC 3 cut(s) 333, 359, 605
HhaI GCGC 4 cut(s) 54, 246, 351, 379
Hin1I GRCGYC 2 cut(s) 89, 423
Hin6I GCGC 4 cut(s) 52, 244, 349, 377
HinP1I GCGC 4 cut(s) 52, 244, 349, 377
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 4 cut(s) 23, 272, 475, 760
HphI GGTGA 4 cut(s) 455, 484, 506, 627
Hpy166II GTNNAC 3 cut(s) 67, 87, 463
Hpy188I TCNGA 5 cut(s) 127, 385, 727, 739, 827
Hpy188III TCNNGA 5 cut(s) 136, 259, 295, 389, 783
Hpy8I GTNNAC 3 cut(s) 67, 87, 463
Hpy99I CGWCG 7 cut(s) 91, 260, 377, 428, 443, 446, 532
HpyAV CCTTC 4 cut(s) 334, 370, 481, 485
HpyCH4III ACNGT 2 cut(s) 265, 449
HpyCH4IV ACGT 4 cut(s) 89, 372, 399, 423
HpyCH4V TGCA 3 cut(s) 165, 713, 806
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 49, 171, 241, 435, 586
HpyF3I CTNAG 1 cut(s) 629
HpySE526I ACGT 4 cut(s) 89, 372, 399, 423
Hsp92I GRCGYC 2 cut(s) 89, 423
HspAI GCGC 4 cut(s) 52, 244, 349, 377
KroI GCCGGC 1 cut(s) 589
KroNI GCCGGC 1 cut(s) 591
KspI CCGCGG 1 cut(s) 83
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 123, 728
Lsp1109I GCAGC 5 cut(s) 27, 161, 253, 566, 655
LweI GCATC 1 cut(s) 534
MaeI CTAG 1 cut(s) 672
MaeII ACGT 4 cut(s) 89, 372, 399, 423
MaeIII GTNAC 2 cut(s) 449, 633
MboII GAAGA 1 cut(s) 205
MflI RGATCY 4 cut(s) 132, 180, 193, 739
MhlI GDGCHC 3 cut(s) 36, 213, 725
MluCI AATT 1 cut(s) 750
MlyI GAGTC 2 cut(s) 32, 266
MmeI TCCRAC 2 cut(s) 150, 750
MroNI GCCGGC 1 cut(s) 589
MseI TTAA 1 cut(s) 596
MspA1I CMGCKG 3 cut(s) 82, 174, 557
MspR9I CCNGG 9 cut(s) 152, 237, 467, 541, 568, 602, 615, 616, 622
MvaI CCWGG 1 cut(s) 602
MvnI CGCG 4 cut(s) 54, 82, 246, 377
MwoI GCNNNNNNNGC 6 cut(s) 40, 49, 171, 241, 435, 586
NaeI GCCGGC 1 cut(s) 591
NciI CCSGG 8 cut(s) 152, 237, 467, 541, 568, 615, 616, 622
NgoMIV GCCGGC 1 cut(s) 589
NlaIV GGNNCC 6 cut(s) 119, 195, 310, 538, 606, 619
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 449, 633
PaeR7I CTCGAG 1 cut(s) 188
PceI AGGCCT 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 5 cut(s) 342, 360, 369, 381, 396
PdiI GCCGGC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 475, 760
PflMI CCANNNNNTGG 1 cut(s) 776
PfoI TCCNGGA 1 cut(s) 620
PleI GAGTC 2 cut(s) 31, 266
PpsI GAGTC 2 cut(s) 31, 266
PshAI GACNNNNGTC 2 cut(s) 254, 447
Psp124BI GAGCTC 2 cut(s) 213, 725
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 633
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 6 cut(s) 119, 195, 310, 538, 606, 619
PspPI GGNCC 4 cut(s) 169, 537, 604, 618
PspXI VCTCGAGB 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 4 cut(s) 132, 180, 193, 739
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 101, 398
RsaNI GTAC 2 cut(s) 100, 397
SacI GAGCTC 2 cut(s) 213, 725
SacII CCGCGG 1 cut(s) 83
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 596
Sau96I GGNCC 4 cut(s) 169, 537, 604, 618
SchI GAGTC 2 cut(s) 32, 266
ScrFI CCNGG 9 cut(s) 152, 237, 467, 541, 568, 602, 615, 616, 622
SduI GDGCHC 3 cut(s) 36, 213, 725
SfaNI GCATC 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 83
SinI GGWCC 3 cut(s) 169, 537, 618
SlaI CTCGAG 1 cut(s) 188
SmaI CCCGGG 1 cut(s) 616
SmlI CTYRAG 2 cut(s) 188, 293
SmoI CTYRAG 2 cut(s) 188, 293
Sse9I AATT 1 cut(s) 750
SseBI AGGCCT 1 cut(s) 359
SspMI CTAG 1 cut(s) 672
SstI GAGCTC 2 cut(s) 213, 725
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 9 cut(s) 150, 235, 465, 539, 566, 600, 613, 614, 620
TaaI ACNGT 2 cut(s) 265, 449
TaiI ACGT 4 cut(s) 92, 375, 402, 426
TaqI TCGA 7 cut(s) 30, 86, 189, 258, 270, 300, 363
TasI AATT 1 cut(s) 750
TauI GCSGC 8 cut(s) 82, 111, 221, 432, 435, 438, 646, 649
TfiI GAWTC 2 cut(s) 475, 760
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TseFI GTSAC 2 cut(s) 449, 633
TseI GCWGC 6 cut(s) 40, 174, 241, 554, 668, 818
Tsp45I GTSAC 2 cut(s) 449, 633
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 244
TspMI CCCGGG 1 cut(s) 614
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 3 cut(s) 169, 537, 618
XhoI CTCGAG 1 cut(s) 188
XmaI CCCGGG 1 cut(s) 614
XmiI GTMKAC 2 cut(s) 66, 86
XspI CTAG 1 cut(s) 672
ZraI GACGTC 2 cut(s) 90, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.