Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

20082967 .. 20085434

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G221400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCGTTCGAGGACGAGGAGGAGGCGTTCGAGCACACGCTGCTCGTGGTCCGCGAGGTCGCCGTCTACAAAATCCCGCCGCGGAGCACATCCGGCGGGTACAAGTGCGGCGAGTGGCTCCAGTCCGATAAGATCTGGTCGGGTCGGCTCCGGGTCGTGTCGTGCAAGGACCGGTGCGAGATCCGACTGGAGGATCCGAACTCCAGCGAGCTCTTCGCCGCCTGCTTCGTCCACCCGGGCCAGCGCGAGACCTCCGTAGAGACCGTGCTCGACTCGTCGCGATACTTCGTGCTCAAGATCGAGGACGGCACCGGAAAGCACGCGTTCATTGGGCTGGGGTTTGCAGAGCGAAACGAAGCGTTTGATTTCAACGTGGCTTTATCGGACCACGAGAAGTACGTCAAGAGAGAGCACGAGAAGGAGAGCAACGGCGGCGAGACCAGCGACGATGGCCATATCGATATTCACCCTGCCGTTAATCACAGATTGAAAGAAGGTGAGACGATAAGGATAAATGTGAAGCCGAAGCCGACGAGTGGGACTGGGATGTTGTCAGCGGCTGGGCTATCCGGGACGGTGAAGCCCAAACCGATTAGTTTGGGCCTGGCTCCGCCGCCGGGGTCCGGGAAGGTGAGGTCGGCTCTGCCGCCACCTCCTAATGACCCTGTTGCTGCTAGAATCAGCTCTGGTGGTGGCCTCAAGTCACCCCCTGATAACCCAAGGCGGAGCTCCGACCCGTTATCTGATCTTTCTCAGATTGAGAGGAATCTTCCTTCAGCGACTGGATCAGGTTCAACAAAGACAACCGCTGGAGGATGGGCGGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0042623 GO:0042626 GO:0043492 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1681

Protein Analysis

277

Amino Acids

29.78

Weight (kDa)

6.1

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	5 cut(s)	54, 82, 246, 280, 323
AclWI	GGATC	4 cut(s)	175, 188, 201, 793
AcoI	YGGCCR	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	2 cut(s)	101, 398
AfiI	CCNNNNNNNGG	4 cut(s)	190, 536, 617, 623
AflIII	ACRYGT	1 cut(s)	321
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	370, 490, 795
AjnI	CCWGG	1 cut(s)	603
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	211, 684, 729
AluI	AGCT	3 cut(s)	211, 684, 729
Alw21I	GWGCWC	7 cut(s)	36, 89, 213, 270, 294, 414, 731
Alw26I	GTCTC	4 cut(s)	242, 254, 431, 494
AlwI	GGATC	4 cut(s)	175, 188, 201, 793
AlwNI	CAGNNNCTG	2 cut(s)	560, 782
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	4 cut(s)	238, 451, 601, 694
ApeKI	GCWGC	2 cut(s)	40, 671
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	6 cut(s)	49, 169, 238, 385, 601, 621
AsuC2I	CCSGG	6 cut(s)	152, 236, 237, 571, 618, 625
AsuHPI	GGTGA	5 cut(s)	458, 509, 589, 643, 696
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	4 cut(s)	49, 169, 385, 621
BalI	TGGCCA	1 cut(s)	453
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	213, 731
BauI	CACGAG	3 cut(s)	44, 389, 413
Bbv12I	GWGCWC	7 cut(s)	36, 89, 213, 270, 294, 414, 731
BbvI	GCAGC	2 cut(s)	27, 658
BccI	CCATC	2 cut(s)	443, 810
BceAI	ACGGC	4 cut(s)	47, 322, 445, 458
BciT130I	CCWGG	1 cut(s)	605
BcnI	CCSGG	6 cut(s)	152, 236, 237, 571, 618, 625
BcoDI	GTCTC	4 cut(s)	242, 254, 431, 494
BfaI	CTAG	1 cut(s)	675
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	7 cut(s)	152, 236, 237, 571, 605, 618, 625
Bme18I	GGWCC	4 cut(s)	49, 169, 385, 621
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	6 cut(s)	49, 169, 238, 385, 601, 621
BmiI	GGNNCC	6 cut(s)	119, 149, 195, 310, 609, 622
BmrFI	CCNGG	7 cut(s)	152, 236, 237, 571, 605, 618, 625
BmrI	ACTGGG	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BpmI	CTGGAG	4 cut(s)	104, 187, 209, 831
BpuEI	CTTGAG	2 cut(s)	278, 683
BpuMI	CCSGG	6 cut(s)	152, 236, 237, 571, 618, 625
Bsa29I	ATCGAT	1 cut(s)	459
BsaI	GGTCTC	3 cut(s)	242, 254, 431
BsaJI	CCNNGG	4 cut(s)	80, 235, 617, 719
BsaWI	WCCGGW	2 cut(s)	171, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 536, 617, 623
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	4 cut(s)	121, 192, 547, 787
BseBI	CCWGG	1 cut(s)	605
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	4 cut(s)	80, 235, 617, 719
BseGI	GGATG	3 cut(s)	89, 552, 821
BseLI	CCNNNNNNNGG	4 cut(s)	190, 536, 617, 623
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	4 cut(s)	121, 192, 547, 787
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	2 cut(s)	27, 658
BseYI	CCCAGC	2 cut(s)	334, 560
Bsh1236I	CGCG	5 cut(s)	54, 82, 246, 280, 323
BshFI	GGCC	4 cut(s)	240, 453, 603, 696
BshNI	GGYRCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	7 cut(s)	36, 89, 213, 270, 294, 414, 731
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	8 cut(s)	93, 151, 172, 236, 312, 570, 617, 624
BslFI	GGGAC	2 cut(s)	553, 586
BslI	CCNNNNNNNGG	4 cut(s)	190, 536, 617, 623
BsmAI	GTCTC	4 cut(s)	242, 254, 431, 494
BsmBI	CGTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	553, 586
BsnI	GGCC	4 cut(s)	240, 453, 603, 696
Bso31I	GGTCTC	3 cut(s)	242, 254, 431
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	7 cut(s)	36, 89, 213, 270, 294, 414, 731
Bsp143I	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
Bsp68I	TCGCGA	1 cut(s)	280
BspANI	GGCC	4 cut(s)	240, 453, 603, 696
BspCNI	CTCAG	1 cut(s)	766
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	5 cut(s)	54, 82, 246, 280, 323
BspLI	GGNNCC	6 cut(s)	119, 149, 195, 310, 609, 622
BspPI	GGATC	4 cut(s)	175, 188, 201, 793
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	3 cut(s)	242, 254, 431
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	121, 192, 547, 787
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	4 cut(s)	80, 235, 617, 719
BssMI	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
BssSI	CACGAG	3 cut(s)	44, 389, 413
BssT1I	CCWWGG	1 cut(s)	719
Bst2BI	CACGAG	3 cut(s)	44, 389, 413
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	2 cut(s)	265, 577
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstC8I	GCNNGC	4 cut(s)	209, 223, 242, 321
BstDEI	CTNAG	1 cut(s)	753
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	89, 552, 821
BstFNI	CGCG	5 cut(s)	54, 82, 246, 280, 323
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	6 cut(s)	135, 183, 196, 300, 748, 788
BstMAI	GTCTC	4 cut(s)	242, 254, 431, 494
BstMBI	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 93, 432, 441, 450
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	7 cut(s)	150, 234, 235, 569, 603, 616, 623
BstUI	CGCG	5 cut(s)	54, 82, 246, 280, 323
BstV1I	GCAGC	2 cut(s)	27, 658
BstX2I	RGATCY	3 cut(s)	132, 180, 193
BstYI	RGATCY	3 cut(s)	132, 180, 193
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	4 cut(s)	240, 453, 603, 696
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	89, 552, 821
BtuMI	TCGCGA	1 cut(s)	280
Cac8I	GCNNGC	4 cut(s)	209, 223, 242, 321
CaiI	CAGNNNCTG	2 cut(s)	560, 782
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	6 cut(s)	49, 169, 238, 385, 601, 621
Cfr42I	CCGCGG	1 cut(s)	83
Cfr9I	CCCGGG	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	100, 397
CspAI	ACCGGT	1 cut(s)	171
CviQI	GTAC	2 cut(s)	100, 397
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	6 cut(s)	134, 182, 195, 299, 747, 787
DpnII	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	2 cut(s)	600, 739
Ecl136II	GAGCTC	2 cut(s)	211, 729
Eco130I	CCWWGG	1 cut(s)	719
Eco24I	GRGCYC	2 cut(s)	213, 731
Eco31I	GGTCTC	3 cut(s)	242, 254, 431
Eco47I	GGWCC	4 cut(s)	49, 169, 385, 621
Eco53kI	GAGCTC	2 cut(s)	211, 729
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	2 cut(s)	211, 729
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	2 cut(s)	213, 731
ErhI	CCWWGG	1 cut(s)	719
Esp3I	CGTCTC	1 cut(s)	494
FaiI	YATR	1 cut(s)	456
FaqI	GGGAC	2 cut(s)	553, 586
FauI	CCCGC	2 cut(s)	84, 89
FblI	GTMKAC	1 cut(s)	66
FokI	GGATG	2 cut(s)	76, 559
FriOI	GRGCYC	2 cut(s)	213, 731
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	1 cut(s)	245
GsaI	CCCAGC	2 cut(s)	338, 564
GsuI	CTGGAG	4 cut(s)	104, 187, 209, 831
HaeIII	GGCC	4 cut(s)	240, 453, 603, 696
HapII	CCGG	8 cut(s)	93, 151, 172, 236, 312, 570, 617, 624
HhaI	GCGC	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	272, 678, 766
HpaII	CCGG	8 cut(s)	93, 151, 172, 236, 312, 570, 617, 624
HphI	GGTGA	5 cut(s)	458, 509, 589, 643, 696
Hpy166II	GTNNAC	2 cut(s)	67, 232
Hpy188I	TCNGA	7 cut(s)	127, 185, 198, 385, 733, 745, 756
Hpy188III	TCNNGA	3 cut(s)	279, 295, 403
Hpy8I	GTNNAC	2 cut(s)	67, 232
Hpy99I	CGWCG	3 cut(s)	280, 449, 535
HpyAV	CCTTC	4 cut(s)	412, 488, 622, 783
HpyCH4III	ACNGT	2 cut(s)	265, 577
HpyCH4IV	ACGT	2 cut(s)	372, 399
HpyCH4V	TGCA	2 cut(s)	165, 344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 93, 432, 441, 450
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	2 cut(s)	372, 399
HspAI	GCGC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	83
Kzo9I	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	6 cut(s)	84, 123, 153, 613, 726, 734
Lsp1109I	GCAGC	2 cut(s)	27, 658
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	2 cut(s)	372, 399
MaeIII	GTNAC	1 cut(s)	702
MalI	GATC	6 cut(s)	134, 182, 195, 299, 747, 787
MboI	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
MboII	GAAGA	2 cut(s)	205, 761
MflI	RGATCY	3 cut(s)	132, 180, 193
MhlI	GDGCHC	7 cut(s)	36, 89, 213, 270, 294, 414, 731
MlsI	TGGCCA	1 cut(s)	453
MluI	ACGCGT	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	208, 756
Mox20I	TGGCCA	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	3 cut(s)	82, 557, 809
MspI	CCGG	8 cut(s)	93, 151, 172, 236, 312, 570, 617, 624
MspR9I	CCNGG	7 cut(s)	152, 236, 237, 571, 605, 618, 625
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	5 cut(s)	54, 82, 246, 280, 323
MwoI	GCNNNNNNNGC	5 cut(s)	40, 93, 432, 441, 450
NciI	CCSGG	6 cut(s)	152, 236, 237, 571, 618, 625
NdeII	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
NlaIV	GGNNCC	6 cut(s)	119, 149, 195, 310, 609, 622
NmuCI	GTSAC	1 cut(s)	702
NruI	TCGCGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 396
PfeI	GAWTC	2 cut(s)	678, 766
PfoI	TCCNGGA	2 cut(s)	569, 623
PinAI	ACCGGT	1 cut(s)	171
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	2 cut(s)	213, 731
Psp6I	CCWGG	1 cut(s)	603
PspFI	CCCAGC	2 cut(s)	334, 560
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	6 cut(s)	119, 149, 195, 310, 609, 622
PspPI	GGNCC	6 cut(s)	49, 169, 238, 385, 601, 621
PstNI	CAGNNNCTG	2 cut(s)	560, 782
PsuI	RGATCY	3 cut(s)	132, 180, 193
RruI	TCGCGA	1 cut(s)	280
RsaI	GTAC	2 cut(s)	101, 398
RsaNI	GTAC	2 cut(s)	100, 397
SacI	GAGCTC	2 cut(s)	213, 731
SacII	CCGCGG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	6 cut(s)	132, 180, 193, 297, 745, 785
Sau96I	GGNCC	6 cut(s)	49, 169, 238, 385, 601, 621
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	7 cut(s)	152, 236, 237, 571, 605, 618, 625
SduI	GDGCHC	7 cut(s)	36, 89, 213, 270, 294, 414, 731
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SinI	GGWCC	4 cut(s)	49, 169, 385, 621
SmaI	CCCGGG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	293, 698
SmoI	CTYRAG	2 cut(s)	293, 698
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	2 cut(s)	213, 731
StyD4I	CCNGG	7 cut(s)	150, 234, 235, 569, 603, 616, 623
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	2 cut(s)	265, 577
TaiI	ACGT	2 cut(s)	375, 402
TaqI	TCGA	5 cut(s)	9, 30, 270, 300, 459
TauI	GCSGC	8 cut(s)	82, 111, 221, 435, 560, 616, 649, 824
TfiI	GAWTC	2 cut(s)	678, 766
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	702
TseI	GCWGC	2 cut(s)	40, 671
Tsp45I	GTSAC	1 cut(s)	702
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	244
TspMI	CCCGGG	1 cut(s)	235
VpaK11BI	GGWCC	4 cut(s)	49, 169, 385, 621
XmaI	CCCGGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.