Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003015

Physical Location & Seq

Genomic Coordinates Reverse (-)

82081736 .. 82082029

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG588000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTGGTGGCAGCTGCGGAACCAGAGTCCGAAGCCCACCTCTCCTTCCTGCCAGATCTCCCCATCCTGTCTCTCTATCCCTCTGAAACCGGCGTATGATACAGGCGTCGCTCATGGAGAAGATCTACTCCCATCGCCGCTCGTCATCGTCTTCCGACGATCTAAGAAGGCCGATGCTGTCAAGAAGACCGATGATGTCAAGCACAAGGTTGACTGGCTAAGGAAGACGACAAGTCATCCGCGCACGATTCCGTCAAGTCCAACAAATTCAGGATCGTCGCCCGGGAAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.66

Weight (kDa)

9.95

Isoelectric Point (pI)

72.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03900
fragaria_vesca	FvH4_2g21210 FvH4_2g21210
malus_domestica	MD05G1194700.v1.1 MD10G1181300.v1.1
prunus_persica	Prupe.8G221400_v2.0.a1
pyrus_communis	pycom05g18200 pycom10g15730
rosa_chinensis	RchiOBHm_Chr6g0287711 RchiOBHm_Chr7g0209161
rosa_laevigata	RLG00000012471 RLG00000018940 RLG00000026057
rosa_multiflora	Rmu_sc0001701.1_g000001 Rmu_sc0003335.1_g000003 Rmu_sc0003877.1_g000015 Rmu_sc0007363.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218930 Rroxscaffold_7G00181090 Rroxscaffold_7G00181260 Rroxscaffold_7G00214750
rosa_rugosa	Rorug06G0191200 Rorug06G0191300 Rorug07G0109900
rosa_samantha	Rh2AG061100 Rh2AG234900 Rh2DG060700 Rh2DG242400 Rh2DG588000 Rh6AG301400 Rh6BG307100 Rh6CG302400 Rh6CG315300 Rh6DG298800 Rh7CG259400
rosa_wichuraiana	Rw6G002890 Rw6G026010 Rw7G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	241
AciI	CCGC	3 cut(s)	16, 137, 239
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	105
AhdI	GACNNNNNGTC	1 cut(s)	231
AluBI	AGCT	2 cut(s)	13, 291
AluI	AGCT	2 cut(s)	13, 291
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	10, 13
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	243
AsuC2I	CCSGG	2 cut(s)	282, 283
AvaI	CYCGRG	1 cut(s)	281
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BbsI	GAAGAC	3 cut(s)	142, 191, 230
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	70, 139
BcnI	CCSGG	2 cut(s)	282, 283
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	292
BglII	AGATCT	2 cut(s)	54, 121
BisI	GCNGC	3 cut(s)	11, 14, 137
BlsI	GCNGC	3 cut(s)	12, 15, 138
Bme1390I	CCNGG	2 cut(s)	282, 283
BmeRI	GACNNNNNGTC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	282, 283
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	3 cut(s)	142, 191, 230
Bpu10I	CCTNAGC	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	282, 283
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	62, 235
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	89, 282
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	54, 121, 158, 272
BspACI	CCGC	3 cut(s)	16, 137, 239
BspANI	GGCC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	4 cut(s)	54, 121, 158, 272
BssNI	GRCGYC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	162, 218
BstF5I	GGATG	2 cut(s)	62, 235
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	57, 124, 161, 275
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	54, 121, 158, 272
BstSCI	CCNGG	2 cut(s)	280, 281
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	3 cut(s)	142, 191, 230
BstX2I	RGATCY	2 cut(s)	54, 121
BstYI	RGATCY	2 cut(s)	54, 121
BsuRI	GGCC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	62, 235
CfoI	GCGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	88
Cfr9I	CCCGGG	1 cut(s)	281
CseI	GACGC	1 cut(s)	94
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	5 cut(s)	13, 34, 170, 217, 291
CviKI_1	RGCY	5 cut(s)	13, 34, 170, 217, 291
DdeI	CTNAG	2 cut(s)	162, 218
DpnI	GATC	4 cut(s)	56, 123, 160, 274
DpnII	GATC	4 cut(s)	54, 121, 158, 272
DriI	GACNNNNNGTC	1 cut(s)	231
Eam1105I	GACNNNNNGTC	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	281
FaeI	CATG	1 cut(s)	116
FaiI	YATR	2 cut(s)	96, 114
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	11, 14, 137
FokI	GGATG	2 cut(s)	49, 222
Fsp4HI	GCNGC	3 cut(s)	11, 14, 137
FspBI	CTAG	1 cut(s)	292
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	11, 14, 137
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	89, 282
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	25, 247
HpaII	CCGG	2 cut(s)	89, 282
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	30, 84, 155
Hpy188III	TCNNGA	2 cut(s)	181, 270
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	3 cut(s)	110, 159, 280
HpyAV	CCTTC	2 cut(s)	54, 160
HpyF3I	CTNAG	2 cut(s)	162, 218
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	54, 121, 158, 272
LpnPI	CCDG	8 cut(s)	35, 61, 65, 79, 87, 102, 199, 255
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	292
MalI	GATC	4 cut(s)	56, 123, 160, 274
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	54, 121, 158, 272
MboII	GAAGA	4 cut(s)	131, 142, 196, 235
MflI	RGATCY	2 cut(s)	54, 121
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	178, 284
MnlI	CCTC	2 cut(s)	49, 90
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	89, 282
MspR9I	CCNGG	2 cut(s)	282, 283
MvnI	CGCG	1 cut(s)	241
NciI	CCSGG	2 cut(s)	282, 283
NdeII	GATC	4 cut(s)	54, 121, 158, 272
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	12, 15, 138
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	54, 121
PvuII	CAGCTG	1 cut(s)	13
SatI	GCNGC	3 cut(s)	11, 14, 137
Sau3AI	GATC	4 cut(s)	54, 121, 158, 272
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	282, 283
SetI	ASST	4 cut(s)	15, 41, 210, 293
SfaNI	GCATC	1 cut(s)	163
SmaI	CCCGGG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	3 cut(s)	16, 137, 239
SspMI	CTAG	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	280, 281
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	1 cut(s)	265
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	10, 13
TspGWI	ACGGA	1 cut(s)	240
TspMI	CCCGGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	265
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.