AT4G19070

cadmium-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005508
Physical Location & Seq
Reverse (-)
10446340 .. 10448218
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19070.2

Sequence Viewer

Length: 516 bp
ATGGTCTTGATGATCATTAAAGGTATATTTCGGAGATATGAAAAATGGAATCCTGTGCATCCTACTTATGGAGCATTTTGGGGAATGGGGATTGGGATTGGTTGTGGCGTCGGATGGGGACCTGGTTTTGGCCCTGAGGTCATTGGTTATGTCGGTGCTGGCTGCGGTGTTGGTTTTAGTGTTGGTATAACACTTGCTGGTCTCGGCATTGGTCTTCCCACAAATTTTCTTCTTGCAGCTCCTTATAACACTGTGGAAGCAACTAGAAAGGGTGCTTTTAATTTCTTTGGTAAAAACCTCTCAACCAATGGTTGGAGTGATTTGATGCCTCAAATCGCGGGGTTGCAGAGACAAGTCAGTGAGATATGCTCTGGTTTTAACAAGAAGCCTCATTTAAATAATGCCATTGACCTAAAAAGTTTTCCTTTGTTCATTTCACATGATTGTGGCAAATTTGGAAGTCATCTTCTCCATGTGCGCAAAGGTTCGGAGGACAATAAATCATCAGCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.31

Weight (kDa)

9.3

Isoelectric Point (pI)

17.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
Acc16I TGCGCA 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 312
AccII CGCG 1 cut(s) 338
AciI CCGC 2 cut(s) 165, 338
AcsI RAATTY 2 cut(s) 223, 452
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 68, 128, 312
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 239, 509
AluI AGCT 2 cut(s) 239, 509
Alw26I GTCTC 2 cut(s) 206, 343
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 162, 236
ApoI RAATTY 2 cut(s) 223, 452
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 2 cut(s) 119, 131
AvaII GGWCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 149, 248
BccI CCATC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 206, 343
BfaI CTAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 163, 237
BlsI GCNGC 2 cut(s) 164, 238
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 119, 131
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 67, 315
BpiI GAAGAC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 128, 312
Bse21I CCTNAGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 58, 119
BseLI CCNNNNNNNGG 3 cut(s) 68, 128, 312
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 149, 248
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 68, 128, 312
BsmAI GTCTC 2 cut(s) 206, 343
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 2 cut(s) 165, 338
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 206
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 58, 119
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 2 cut(s) 206, 343
BstMBI GATC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 2 cut(s) 149, 248
BstV2I GAAGAC 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 58, 119
BtsIMutI CAGTG 2 cut(s) 249, 364
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 119, 131
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 121
CviAII CATG 2 cut(s) 440, 473
CviJI RGCY 5 cut(s) 132, 162, 239, 388, 509
CviKI_1 RGCY 5 cut(s) 132, 162, 239, 388, 509
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
DraI TTTAAA 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 443, 476
FalI AAGNNNNNCTT 2 cut(s) 409, 441
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 439, 472
FauI CCCGC 1 cut(s) 331
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 163, 237
FokI GGATG 2 cut(s) 45, 126
Fsp4HI GCNGC 2 cut(s) 163, 237
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 1 cut(s) 479
GluI GCNGC 2 cut(s) 163, 237
HaeIII GGCC 1 cut(s) 132
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 443, 476
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HinfI GANTC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 33, 113, 490
Hpy188III TCNNGA 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 58, 236, 346
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 443, 476
HspAI GCGC 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 71, 244
LpnPI CCDG 7 cut(s) 66, 108, 135, 144, 147, 183, 357
Lsp1109I GCAGC 2 cut(s) 149, 248
LweI GCATC 2 cut(s) 67, 315
MabI ACCWGGT 1 cut(s) 121
MaeI CTAG 1 cut(s) 264
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 3 cut(s) 206, 221, 458
MluCI AATT 3 cut(s) 223, 280, 452
MmeI TCCRAC 2 cut(s) 91, 293
MnlI CCTC 5 cut(s) 130, 308, 339, 399, 484
MseI TTAA 4 cut(s) 18, 279, 378, 395
MslI CAYNNNNRTG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 338
NdeII GATC 1 cut(s) 12
NlaIII CATG 2 cut(s) 443, 476
NlaIV GGNNCC 1 cut(s) 120
NmeAIII GCCGAG 1 cut(s) 183
NsbI TGCGCA 1 cut(s) 479
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 2 cut(s) 164, 238
PpuMI RGGWCCY 1 cut(s) 119
PsiI TTATAA 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 2 cut(s) 119, 131
PspPPI RGGWCCY 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 4 cut(s) 18, 279, 378, 395
SatI GCNGC 2 cut(s) 163, 237
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 119, 131
ScrFI CCNGG 1 cut(s) 123
SetI ASST 8 cut(s) 25, 124, 141, 241, 300, 414, 487, 511
SexAI ACCWGGT 1 cut(s) 121
SfaNI GCATC 2 cut(s) 67, 315
SinI GGWCC 1 cut(s) 119
SmiI ATTTAAAT 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 3 cut(s) 223, 280, 452
SsiI CCGC 2 cut(s) 165, 338
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 121
SwaI ATTTAAAT 1 cut(s) 396
TaaI ACNGT 1 cut(s) 253
TasI AATT 3 cut(s) 223, 280, 452
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 4 cut(s) 18, 279, 378, 395
Tru9I TTAA 4 cut(s) 18, 279, 378, 395
TscAI CASTG 2 cut(s) 256, 364
TseI GCWGC 2 cut(s) 162, 236
TspDTI ATGAA 2 cut(s) 54, 421
TspRI CASTG 2 cut(s) 256, 364
Van91I CCANNNNNTGG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 2 cut(s) 223, 452
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.