Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002226.1

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Reverse (-)

77648 .. 78695

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002226.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgtctagctatccatatgttttctatgggcctgatcctatttcttacaaacttcagttgaagaagagcttgagcatgcacccaacctctggagcatcttggggtttgggaataggcattggttgtggtgttggatggggttctggttttgggcctgaagtgattggctatgttcgagctggctgtggtgttggcttcagtgtggttttaactctgcttggtgttggtattggtcttcctgcaaattggctctacagagttccttatgatgctgtgatggcagcaagcagtgccgcattgaggcttggcagacctcctggtcttgttttcccgaaaagtatagcaggagaaagttggaaccttgcttggtgttggtattggtcttcctgcaaattggctctacagagagaaagttggaaccttgtgacacaggcctgcaaagagaagctagtggaagattgtatagcttcaagcaacatcttgtggaaggttgaggcaattgatgtgaaaagtcagctaagtgccaatgctaagactgtttgtgatggtgtaacagcatttggtgaatttcatcttccactttcccgaaggttccaaagattgacaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.92

Weight (kDa)

8.98

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	3 cut(s)	38, 177, 181
AfiI	CCNNNNNNNGG	2 cut(s)	89, 300
AgsI	TTSAA	2 cut(s)	61, 471
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	6 cut(s)	9, 69, 179, 448, 467, 517
AluI	AGCT	6 cut(s)	9, 69, 179, 448, 467, 517
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	3 cut(s)	29, 152, 432
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	566
AspS9I	GGNCC	2 cut(s)	29, 152
AsuHPI	GGTGA	1 cut(s)	575
BbsI	GAAGAC	2 cut(s)	227, 375
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	3 cut(s)	129, 271, 539
BciT130I	CCWGG	1 cut(s)	318
BfaI	CTAG	2 cut(s)	6, 449
BfmI	CTRYAG	2 cut(s)	253, 401
BisI	GCNGC	2 cut(s)	282, 294
BlsI	GCNGC	2 cut(s)	283, 295
Bme1390I	CCNGG	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	29, 152
BmiI	GGNNCC	3 cut(s)	359, 419, 593
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	104, 259
BpiI	GAAGAC	2 cut(s)	227, 375
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 300
BseBI	CCWGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	89, 300
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	3 cut(s)	31, 154, 434
BslI	CCNNNNNNNGG	2 cut(s)	89, 300
BsnI	GGCC	3 cut(s)	31, 154, 434
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	3 cut(s)	31, 154, 434
BspLI	GGNNCC	3 cut(s)	359, 419, 593
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	59
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	77, 181, 286, 436
BstDEI	CTNAG	2 cut(s)	518, 531
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 290
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	253, 401
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	2 cut(s)	227, 375
BsuRI	GGCC	3 cut(s)	31, 154, 434
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	205, 295
Cac8I	GCNNGC	4 cut(s)	77, 181, 286, 436
Cfr13I	GGNCC	2 cut(s)	29, 152
CviAII	CATG	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	518, 531
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	318
DseDI	GACNNNNNNGTC	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	434
Eco57I	CTGAAG	3 cut(s)	38, 177, 181
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	79
FaiI	YATR	8 cut(s)	16, 18, 27, 77, 171, 267, 341, 464
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	282, 294
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	282, 294
FspBI	CTAG	2 cut(s)	6, 449
GluI	GCNGC	2 cut(s)	282, 294
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	31, 154, 434
Hin1II	CATG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	575
Hpy188III	TCNNGA	3 cut(s)	90, 331, 585
HpyAV	CCTTC	2 cut(s)	481, 582
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4V	TGCA	4 cut(s)	79, 242, 390, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 290
HpyF3I	CTNAG	2 cut(s)	518, 531
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	2 cut(s)	6, 449
MaeIII	GTNAC	2 cut(s)	424, 550
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	6 cut(s)	73, 76, 227, 375, 467, 566
MfeI	CAATTG	1 cut(s)	498
MluCI	AATT	4 cut(s)	244, 392, 498, 566
MmeI	TCCRAC	3 cut(s)	112, 335, 395
MnlI	CCTC	4 cut(s)	97, 294, 324, 487
MseI	TTAA	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	278, 290
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	359, 419, 593
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	79
PaeI	GCATGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	283, 295
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	359, 419, 593
PspPI	GGNCC	2 cut(s)	29, 152
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	2 cut(s)	282, 294
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	29, 152
ScrFI	CCNGG	1 cut(s)	318
SfaNI	GCATC	2 cut(s)	104, 259
SfcI	CTRYAG	2 cut(s)	253, 401
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	4 cut(s)	244, 392, 498, 566
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	2 cut(s)	6, 449
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	538
TaqI	TCGA	1 cut(s)	175
TasI	AATT	4 cut(s)	244, 392, 498, 566
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	2 cut(s)	205, 295
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	205, 295
Van91I	CCANNNNNTGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	1 cut(s)	79
XspI	CTAG	2 cut(s)	6, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.