Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Reverse (-)

2350513 .. 2354049

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G021500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATAATAAAAGGACTGTTCAGGAGGTATGAAAGATGGAACCCAGTTCACCCAACATCTGGAGCATTTTGGGGATTGGGAGTAGGAATTGGTTGTGGTATTGGATGGGGTCCTGGTTTTGGGCCTGAGGTGATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTTAGTGTTGGTTTCACTCTGCTTGGTGCTGGCATTGGTCTTCCTGCAAATTGGCTCCTTCAAGTTCCTTATAATGCTGCTATGGCAACAAGAAGTGGTGCATTGGGGTTTGGTCAATATAGTGGTCTTCCTTTCTCCAAAAACATTGCAGGGGAGGGCTGGAACAACATTGCACCTTGCTTCACAAACCTGCAGAGAGAAGCCAGTGGAAGGTTCTCTAGCTTTAATCAACAACATCTTTTGGACAAAGGGGTTGATTTATTTGAAATGAAGAGCCGGCTAAGTGTCAATGCTAGTTCTATGTGTGAAAGTTTACAAGCATTTCGGGGACGCATCTTCCACTCTCCCAAAGGTACAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

18.77

Weight (kDa)

9.59

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	363
AccB7I	CCANNNNNTGG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	3 cut(s)	59, 119, 375
AgsI	TTSAA	2 cut(s)	227, 431
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	149, 387
AluI	AGCT	2 cut(s)	149, 387
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	110, 122
AsuHPI	GGTGA	2 cut(s)	41, 142
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	197, 284
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	30, 99
BciT130I	CCWGG	1 cut(s)	114
BfaI	CTAG	2 cut(s)	384, 459
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	110, 122
BmiI	GGNNCC	3 cut(s)	41, 111, 221
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	507
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	2 cut(s)	197, 284
BpmI	CTGGAG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 119, 375
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	44, 369
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	309, 333
BseBI	CCWGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	110, 158
BseLI	CCNNNNNNNGG	3 cut(s)	59, 119, 375
BseMI	GCAATG	2 cut(s)	309, 333
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	44, 369
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	59, 119, 375
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	41, 111, 221
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	309, 333
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	44, 369
BssAI	RCCGGY	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	196, 443
BstDEI	CTNAG	2 cut(s)	126, 446
BstF5I	GGATG	2 cut(s)	110, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	2 cut(s)	197, 284
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	110, 158
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	196, 443
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	110, 122
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	519
CviJI	RGCY	8 cut(s)	124, 149, 220, 324, 368, 387, 441, 445
CviKI_1	RGCY	8 cut(s)	124, 149, 220, 324, 368, 387, 441, 445
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	2 cut(s)	126, 446
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	112
FaiI	YATR	6 cut(s)	30, 141, 237, 248, 285, 467
FaqI	GGGAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	2 cut(s)	117, 165
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	384, 459
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	2 cut(s)	41, 142
Hpy166II	GTNNAC	2 cut(s)	49, 479
Hpy188III	TCNNGA	2 cut(s)	22, 60
Hpy8I	GTNNAC	2 cut(s)	49, 479
HpyAV	CCTTC	2 cut(s)	233, 369
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	212, 266, 314, 338, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	126, 446
KroI	GCCGGC	1 cut(s)	441
KroNI	GCCGGC	1 cut(s)	443
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	3 cut(s)	62, 146, 225
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	384, 459
MboII	GAAGA	4 cut(s)	197, 284, 448, 493
MluCI	AATT	2 cut(s)	87, 214
MmeI	TCCRAC	2 cut(s)	124, 142
MnlI	CCTC	3 cut(s)	18, 121, 313
MroNI	GCCGGC	1 cut(s)	441
MseI	TTAA	1 cut(s)	390
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	248
NaeI	GCCGGC	1 cut(s)	443
NgoMIV	GCCGGC	1 cut(s)	441
NlaIV	GGNNCC	3 cut(s)	41, 111, 221
PciSI	GCTCTTC	1 cut(s)	431
PdiI	GCCGGC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	41, 111, 221
PspPI	GGNCC	2 cut(s)	110, 122
PspPPI	RGGWCCY	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	243
Sau96I	GGNCC	2 cut(s)	110, 122
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	8 cut(s)	29, 132, 151, 343, 357, 380, 389, 520
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	2 cut(s)	87, 214
SspMI	CTAG	2 cut(s)	384, 459
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	18
TasI	AATT	2 cut(s)	87, 214
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	45, 449
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	110
XspI	CTAG	2 cut(s)	384, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.