Rroxscaffold_3G00246110

Cadmium-induced protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
39202278 .. 39206052
3775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246110.1

Sequence Viewer

Length: 525 bp
ATGATTATAAAAGGAGTGTTCAGGAGGTATGAAAGATGGAACCCAGTGCACCCAACCTCTGGAGCATTTTGGGGTTTGGGAATAGGCATTGGTTGTGGTGTTGGATGGGGTCCTGGTTTTGGGCCTGAAGTGATTGGCTATGTTGGAGCTGGCTGTGGTGTTGGCTTCAGTGTTGGTTTCACTTTGCTTGGTGTTGGTATTGGTCTTCCTGCAAATTGGCTCTACACTGTTCCTTATCAGGCTGTTATGGCATCAAGAAGTACTGCATTGAGGCTTGGTAGACCTCCTGGTCTTGTTTTCTCCAAAAGTATAGCAGGAGAGGGTTGGGATAAGATAGCACCGTGTGTCATAGGGCTGCAAAGAGAAGCCAGTGGAAGATTGTCTAGCTTCACACAACATCTTGTGGAAGGGTTCGAGTCAATTGATGTGAAGAGTCAGCTAAGTGCCAATAGTAAGAATGTTTGTGATGGTTTAACAGCGTTTGGTGAACGCATCTTCCACTTTCCTAAAGGTTCCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.44

Weight (kDa)

9.21

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AasI GACNNNNNNGTC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 147, 151
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 2 cut(s) 59, 119
AjnI CCWGG 2 cut(s) 112, 286
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 149, 387, 439
AluI AGCT 3 cut(s) 149, 387, 439
Alw21I GWGCWC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 47
AoxI GGCC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 110, 122
AsuHPI GGTGA 1 cut(s) 497
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 342
BccI CCATC 3 cut(s) 30, 99, 461
BciT130I CCWGG 2 cut(s) 114, 288
BfaI CTAG 1 cut(s) 384
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 114, 288
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 122
BmiI GGNNCC 3 cut(s) 41, 111, 514
BmrFI CCNGG 2 cut(s) 114, 288
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 260, 501
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 119
Bse1I ACTGG 2 cut(s) 44, 369
BseBI CCWGG 2 cut(s) 114, 288
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 59, 119
BseNI ACTGG 2 cut(s) 44, 369
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 342
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 59, 119
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 51
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 41, 111, 514
BsrI ACTGG 2 cut(s) 44, 369
Bst2UI CCWGG 2 cut(s) 114, 288
Bst4CI ACNGT 2 cut(s) 229, 342
Bst6I CTCTTC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 2 cut(s) 114, 288
BstSCI CCNGG 2 cut(s) 112, 286
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 4 cut(s) 51, 175, 225, 376
Cac8I GCNNGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 110, 122
Csp6I GTAC 1 cut(s) 261
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 440
DraIII CACNNNGTG 1 cut(s) 344
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 147, 151
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 112, 286
FaiI YATR 6 cut(s) 8, 30, 141, 248, 311, 350
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 1 cut(s) 384
GluI GCNGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 124
HinfI GANTC 2 cut(s) 416, 433
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 3 cut(s) 49, 281, 488
Hpy188III TCNNGA 3 cut(s) 22, 60, 255
Hpy8I GTNNAC 3 cut(s) 49, 281, 488
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 2 cut(s) 229, 342
HpyCH4V TGCA 4 cut(s) 49, 212, 266, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 440
LmnI GCTCC 2 cut(s) 62, 146
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 260, 501
MaeI CTAG 1 cut(s) 384
MboII GAAGA 4 cut(s) 197, 387, 442, 487
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 214, 420
MlyI GAGTC 2 cut(s) 425, 442
MmeI TCCRAC 2 cut(s) 82, 124
MnlI CCTC 5 cut(s) 18, 67, 264, 294, 313
MseI TTAA 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 114, 288
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 2 cut(s) 114, 288
MwoI GCNNNNNNNGC 1 cut(s) 248
NlaIV GGNNCC 3 cut(s) 41, 111, 514
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 2 cut(s) 424, 441
PpsI GAGTC 2 cut(s) 424, 441
PpuMI RGGWCCY 1 cut(s) 110
PsiI TTATAA 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 112, 286
PspGI CCWGG 2 cut(s) 112, 286
PspN4I GGNNCC 3 cut(s) 41, 111, 514
PspPI GGNCC 2 cut(s) 110, 122
PspPPI RGGWCCY 1 cut(s) 110
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 1 cut(s) 356
Sau96I GGNCC 2 cut(s) 110, 122
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 2 cut(s) 425, 442
ScrFI CCNGG 2 cut(s) 114, 288
SduI GDGCHC 1 cut(s) 51
SetI ASST 7 cut(s) 29, 59, 151, 286, 389, 441, 514
SfaNI GCATC 2 cut(s) 260, 501
SinI GGWCC 1 cut(s) 110
Sse9I AATT 2 cut(s) 214, 420
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 112, 286
TaaI ACNGT 2 cut(s) 229, 342
TaqI TCGA 1 cut(s) 414
TasI AATT 2 cut(s) 214, 420
TatI WGTACW 1 cut(s) 260
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 4 cut(s) 51, 175, 232, 376
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 4 cut(s) 51, 175, 232, 376
Van91I CCANNNNNTGG 1 cut(s) 59
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 1 cut(s) 384
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.