Rh6BG375900

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005508
Physical Location & Seq
Reverse (-)
60488686 .. 60488997
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG375900.1

Sequence Viewer

Length: 312 bp
ATGACCCGGTTCGAACCCAGCTTTTTTTATGTTGGGCTTACCAAGAGAACCCAAATTTTGGAAGACGACGAGTCGATGGAAGAATGTCGAGAGGAAATGCGGAGTCCACGAGTGACTCTGGTCTCGGTCGTCGGCTGCTCAAAGCTCCATTCCTCCATCTCCACCCACCTCCTCTCCCTCGATCCTCAAATCAACACCTTGGCCTTGCCCGACCCTCACAGTGGTTTACATTGTGCCGCAAAAACATCGAAATATCAAGAAGCAATTGTTGTGTGTATCAATCGAAAAGAAATTATTAGTGTATGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

6.05

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 100, 237
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 58, 221
AhdI GACNNNNNGTC 1 cut(s) 70
AluBI AGCT 2 cut(s) 21, 145
AluI AGCT 2 cut(s) 21, 145
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 12
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 70, 164
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 127
BisI GCNGC 2 cut(s) 136, 237
BlsI GCNGC 2 cut(s) 137, 238
Bme1390I CCNGG 1 cut(s) 7
BmeRI GACNNNNNGTC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 7
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 221
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 58, 221
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 58, 221
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 127
Bsp119I TTCGAA 1 cut(s) 12
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 2 cut(s) 100, 237
BspANI GGCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 12
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 129
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 226
CviJI RGCY 5 cut(s) 21, 37, 135, 145, 203
CviKI_1 RGCY 5 cut(s) 21, 37, 135, 145, 203
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DriI GACNNNNNGTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaiI YATR 2 cut(s) 30, 304
Fnu4HI GCNGC 2 cut(s) 136, 237
Fsp4HI GCNGC 2 cut(s) 136, 237
GluI GCNGC 2 cut(s) 136, 237
GsaI CCCAGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 7
HinfI GANTC 3 cut(s) 71, 103, 115
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 107, 227
Hpy188III TCNNGA 2 cut(s) 89, 257
Hpy8I GTNNAC 2 cut(s) 107, 227
Hpy99I CGWCG 2 cut(s) 71, 134
HpyCH4III ACNGT 1 cut(s) 221
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 3 cut(s) 20, 31, 104
Lsp1109I GCAGC 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 74, 92
MfeI CAATTG 1 cut(s) 264
MluCI AATT 3 cut(s) 54, 264, 291
MlyI GAGTC 3 cut(s) 80, 109, 112
MnlI CCTC 7 cut(s) 85, 163, 179, 182, 188, 195, 225
MseI TTAA 1 cut(s) 310
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 264
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 112
NspV TTCGAA 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 2 cut(s) 137, 238
PleI GAGTC 3 cut(s) 79, 109, 111
PpsI GAGTC 3 cut(s) 79, 109, 111
PshAI GACNNNNGTC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 2 cut(s) 136, 237
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 3 cut(s) 80, 109, 112
ScrFI CCNGG 1 cut(s) 7
SetI ASST 4 cut(s) 23, 147, 171, 200
SfuI TTCGAA 1 cut(s) 12
Sse9I AATT 3 cut(s) 54, 264, 291
SsiI CCGC 2 cut(s) 100, 237
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 6 cut(s) 12, 74, 88, 180, 248, 283
TaqII GACCGA 1 cut(s) 115
TasI AATT 3 cut(s) 54, 264, 291
TauI GCSGC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 112
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 58
XapI RAATTY 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.