RLG00000003095

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005508
Physical Location & Seq
Reverse (-)
44360060 .. 44361723
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003095

Sequence Viewer

Length: 858 bp
ATGGAAGAATATCCAGAGGAAATGCGGAGTCCGCCAGTGAGTCTGGTCTCAATCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCCCTCGACCCTCTGATCAACACCTTGGCCTTGCCAGACCTCTCCAAGGTCTCTCTCCTCTTACCTTCCCCCAAGCCCAATCCCGCCGACTCCTCCTCCTCAGCCTCCGCCGCCGCTCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGGGTCTCCGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAATCGACAATCTCAAGGGGCTTATCCGCTGCCGGAGCATCAAATTGGTCATCGTCGTCGTCAACTCCCACTCCACTGGTTGTTTCTTCTGGTGCGGCGACGGAGATTGTCCGTCAAAGGCGGCGTTGGGATGGTGGTGGGGCGTCTGGATCGGGTTTGCCTTGGTGCACAATGGGCGATGATCTCGTCCAACAAACTTGCAAGAAAGCCTCAGCTGCTGATAAAAACTTGAACTACAACTTTTGTGTCTCAGCCCTTGAGGCCAGCCCGAAAAGCAAGGGTGCAGACCTCGCAGGACTAGCCGGCATTGCACTTGACCTAACCACAGCGAAGGCGACAAGCATCAAGTCTACCATTTCAAAGCTCTTGAACGATCCAAAAGTTGACAAGCCTGCGCTACAAGACTGCGAAGAACTCTACTCAGATGCCACTGATGGCCTGCAAGAAGCCACCAATGCTTCAAGTCCAGTGATTATGGTACAGCTCTTACACATCTCAGTGCTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

286

Amino Acids

29.79

Weight (kDa)

5.55

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 177 - 269 1.5e-16 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 698
AccII CGCG 1 cut(s) 243
AclWI GGATC 3 cut(s) 312, 505, 716
AcsI RAATTY 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 491
AfaI GTAC 1 cut(s) 828
AfiI CCNNNNNNNGG 3 cut(s) 145, 227, 306
AgsI TTSAA 5 cut(s) 238, 580, 708, 718, 810
AluBI AGCT 5 cut(s) 70, 340, 563, 712, 832
AluI AGCT 5 cut(s) 70, 340, 563, 712, 832
Alw21I GWGCWC 3 cut(s) 72, 342, 518
Alw26I GTCTC 4 cut(s) 52, 154, 316, 601
Alw44I GTGCAC 1 cut(s) 514
AlwI GGATC 3 cut(s) 312, 505, 716
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 4 cut(s) 126, 324, 609, 784
ApaLI GTGCAC 1 cut(s) 514
ApeKI GCWGC 3 cut(s) 60, 377, 563
ApoI RAATTY 1 cut(s) 231
AspLEI GCGC 2 cut(s) 243, 745
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 518
BanII GRGCYC 2 cut(s) 72, 342
Bbv12I GWGCWC 3 cut(s) 72, 342, 518
BbvCI CCTCAGC 2 cut(s) 199, 559
BbvI GCAGC 3 cut(s) 47, 364, 550
BccI CCATC 2 cut(s) 473, 776
BceAI ACGGC 1 cut(s) 263
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 4 cut(s) 52, 154, 316, 601
BfaI CTAG 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 8 cut(s) 61, 210, 213, 288, 378, 444, 470, 564
BlsI GCNGC 8 cut(s) 62, 211, 214, 289, 379, 445, 471, 565
Bme1390I CCNGG 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 323
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 395, 699, 763
BmuI ACTGGG 1 cut(s) 322
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 329, 361
Bpu10I CCTNAGC 2 cut(s) 199, 559
BpuEI CTTGAG 3 cut(s) 239, 346, 626
BpuMI CCSGG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 491
BsaI GGTCTC 3 cut(s) 52, 154, 316
BsaJI CCNNGG 4 cut(s) 123, 144, 300, 509
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 179, 209, 403, 433
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 227, 306
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 4 cut(s) 35, 328, 429, 815
Bse3DI GCAATG 1 cut(s) 654
BseDI CCNNGG 4 cut(s) 123, 144, 300, 509
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 145, 227, 306
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 5 cut(s) 213, 573, 612, 783, 858
BseNI ACTGG 4 cut(s) 35, 328, 429, 815
BseRI GAGGAG 7 cut(s) 146, 181, 184, 187, 207, 210, 289
BseSI GKGCMC 1 cut(s) 518
BseXI GCAGC 3 cut(s) 47, 364, 550
BsgI GTGCAG 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 4 cut(s) 128, 326, 611, 786
BsiHKAI GWGCWC 3 cut(s) 72, 342, 518
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 5 cut(s) 228, 315, 323, 381, 651
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 145, 227, 306
BsmAI GTCTC 4 cut(s) 52, 154, 316, 601
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 4 cut(s) 128, 326, 611, 786
Bso31I GGTCTC 3 cut(s) 52, 154, 316
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 3 cut(s) 72, 342, 518
Bsp143I GATC 5 cut(s) 114, 304, 497, 529, 721
BspANI GGCC 4 cut(s) 128, 326, 611, 786
BspCNI CTCAG 5 cut(s) 212, 572, 611, 782, 857
BspFNI CGCG 1 cut(s) 243
BspPI GGATC 3 cut(s) 312, 505, 716
BspTNI GGTCTC 3 cut(s) 52, 154, 316
BsrBI CCGCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 650
BsrI ACTGG 4 cut(s) 35, 328, 429, 815
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 4 cut(s) 123, 144, 300, 509
BssMI GATC 5 cut(s) 114, 304, 497, 529, 721
BssNI GRCGYC 1 cut(s) 491
BssT1I CCWWGG 3 cut(s) 123, 144, 509
BstACI GRCGYC 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 613, 652, 741, 788
BstDEI CTNAG 5 cut(s) 199, 559, 598, 769, 844
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 2 cut(s) 243, 745
BstKTI GATC 5 cut(s) 117, 307, 500, 532, 724
BstMAI GTCTC 4 cut(s) 52, 154, 316, 601
BstMBI GATC 5 cut(s) 114, 304, 497, 529, 721
BstSCI CCNGG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 47, 364, 550
BstXI CCANNNNNNTGG 1 cut(s) 424
BsuRI GGCC 4 cut(s) 128, 326, 611, 786
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 6 cut(s) 42, 335, 422, 777, 822, 852
Cac8I GCNNGC 4 cut(s) 613, 652, 741, 788
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 2 cut(s) 243, 745
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 1 cut(s) 325
CseI GACGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 827
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 5 cut(s) 199, 559, 598, 769, 844
DpnI GATC 5 cut(s) 116, 306, 499, 531, 723
DpnII GATC 5 cut(s) 114, 304, 497, 529, 721
EciI GGCGGA 2 cut(s) 21, 196
Ecl136II GAGCTC 2 cut(s) 70, 340
Eco130I CCWWGG 3 cut(s) 123, 144, 509
Eco24I GRGCYC 2 cut(s) 72, 342
Eco31I GGTCTC 3 cut(s) 52, 154, 316
Eco53kI GAGCTC 2 cut(s) 70, 340
Eco88I CYCGRG 1 cut(s) 335
EcoICRI GAGCTC 2 cut(s) 70, 340
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 123, 144, 509
EcoT38I GRGCYC 2 cut(s) 72, 342
ErhI CCWWGG 3 cut(s) 123, 144, 509
FaiI YATR 1 cut(s) 824
FaqI GGGAC 1 cut(s) 257
FauI CCCGC 3 cut(s) 190, 232, 283
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 698
Fnu4HI GCNGC 8 cut(s) 61, 210, 213, 288, 378, 444, 470, 564
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 2 cut(s) 72, 342
Fsp4HI GCNGC 8 cut(s) 61, 210, 213, 288, 378, 444, 470, 564
FspBI CTAG 1 cut(s) 647
GlaI GCGC 2 cut(s) 242, 744
GluI GCNGC 8 cut(s) 61, 210, 213, 288, 378, 444, 470, 564
HaeIII GGCC 4 cut(s) 128, 326, 611, 786
HapII CCGG 5 cut(s) 228, 315, 323, 381, 651
HgaI GACGC 1 cut(s) 480
HhaI GCGC 2 cut(s) 243, 745
Hin1I GRCGYC 1 cut(s) 491
Hin6I GCGC 2 cut(s) 241, 743
HinP1I GCGC 2 cut(s) 241, 743
HincII GTYRAC 2 cut(s) 411, 733
HindII GTYRAC 2 cut(s) 411, 733
HinfI GANTC 4 cut(s) 28, 40, 188, 350
HpaII CCGG 5 cut(s) 228, 315, 323, 381, 651
Hpy166II GTNNAC 4 cut(s) 411, 516, 699, 733
Hpy188I TCNGA 5 cut(s) 67, 114, 304, 349, 772
Hpy188III TCNNGA 3 cut(s) 14, 495, 715
Hpy8I GTNNAC 4 cut(s) 411, 516, 699, 733
Hpy99I CGWCG 4 cut(s) 59, 406, 409, 451
HpyAV CCTTC 3 cut(s) 88, 174, 673
HpyCH4V TGCA 5 cut(s) 516, 549, 632, 659, 790
HpyF3I CTNAG 5 cut(s) 199, 559, 598, 769, 844
Hsp92I GRCGYC 1 cut(s) 491
HspAI GCGC 2 cut(s) 241, 743
KroI GCCGGC 1 cut(s) 650
KroNI GCCGGC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 5 cut(s) 114, 304, 497, 529, 721
LmnI GCTCC 5 cut(s) 67, 75, 220, 350, 383
Lsp1109I GCAGC 3 cut(s) 47, 364, 550
LweI GCATC 3 cut(s) 395, 699, 763
MaeI CTAG 1 cut(s) 647
MalI GATC 5 cut(s) 116, 306, 499, 531, 723
MbiI CCGCTC 1 cut(s) 215
MboI GATC 5 cut(s) 114, 304, 497, 529, 721
MboII GAAGA 3 cut(s) 17, 426, 770
MhlI GDGCHC 3 cut(s) 72, 342, 518
MluCI AATT 2 cut(s) 231, 391
MlyI GAGTC 3 cut(s) 37, 49, 182
MmeI TCCRAC 1 cut(s) 562
MroNI GCCGGC 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 2 cut(s) 377, 563
MspI CCGG 5 cut(s) 228, 315, 323, 381, 651
MspR9I CCNGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 243
NaeI GCCGGC 1 cut(s) 652
NciI CCSGG 1 cut(s) 323
NdeII GATC 5 cut(s) 114, 304, 497, 529, 721
NgoMIV GCCGGC 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 8 cut(s) 62, 211, 214, 289, 379, 445, 471, 565
PleI GAGTC 3 cut(s) 36, 48, 182
PpsI GAGTC 3 cut(s) 36, 48, 182
Psp124BI GAGCTC 2 cut(s) 72, 342
PspPI GGNCC 1 cut(s) 325
PspXI VCTCGAGB 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
RseI CAYNNNNRTG 1 cut(s) 845
SacI GAGCTC 2 cut(s) 72, 342
SatI GCNGC 8 cut(s) 61, 210, 213, 288, 378, 444, 470, 564
Sau3AI GATC 5 cut(s) 114, 304, 497, 529, 721
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 3 cut(s) 37, 49, 182
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 3 cut(s) 72, 342, 518
SfaNI GCATC 3 cut(s) 395, 699, 763
Sfr274I CTCGAG 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 4 cut(s) 254, 335, 361, 605
SmoI CTYRAG 4 cut(s) 254, 335, 361, 605
Sse9I AATT 2 cut(s) 231, 391
SspMI CTAG 1 cut(s) 647
SstI GAGCTC 2 cut(s) 72, 342
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 3 cut(s) 123, 144, 509
TaqI TCGA 3 cut(s) 105, 336, 353
TasI AATT 2 cut(s) 231, 391
TauI GCSGC 5 cut(s) 212, 215, 290, 446, 472
TfiI GAWTC 1 cut(s) 350
TscAI CASTG 6 cut(s) 42, 335, 429, 784, 822, 852
TseI GCWGC 3 cut(s) 60, 377, 563
TspDTI ATGAA 1 cut(s) 70
TspGWI ACGGA 2 cut(s) 449, 464
TspRI CASTG 6 cut(s) 42, 335, 429, 784, 822, 852
VneI GTGCAC 1 cut(s) 514
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 698
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.