Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Forward (+)

40285957 .. 40290936

Gene Structure 4980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAAGAATATCCAGAGGAAATGCGGAGTCCGCAGGTGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCCCTCGACCCTCCGATCAACACCTTGGCCTTGCCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTTCCCCCAAGCCCAATCCCGCTGACTCCTCCTCCTCAGCCTCCGCCGCCGCTCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCAGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGAGTCTCCGGCGACCCGACCCAGTGGCTCGAGCTCTGCTCCGAAATCGACAATCTCAAAGGGCTTATCCGCGGCCGGAGCATCAAATTGGTCATCGTCGTCGTCAACTCCCACTCCACTATGTCCAATAGTTCACTTCAAAGAGGAAGAACGACCAGAGCTCACATCACAGGAGATAAAATGATTATAAAAGGAGTGTTCAGGAGGTATGAAAGATGGAACCCAGTGCACCCAACCTCTGGAGCATTTTGGGGTTTGGGAATAGGCATTGGTTGTGGTGTTGGATGGGGTCCTGGTTTTGGGCCTGAAGTGATTGGCTATGTTGGAGCTGGCTGTGGTGTTGGCTTCAGTGTTGGTTTCACTTTGCTTGGTGTTGGTATTGGTCTTCCTGCAAATTGGCTCTACACTGTTCCTTATCAGGCTGTTATGGCAGCAAGAAGTACTGCATTGAGGCTTGGTGGACCTCCTGGTCTTGTTTTCTCCACAAGTATAGCAGGAGAGAGTTGGGATAAAATAGCACCGTGTGTCATAGGGCTGCAAAGAGAAGCCAGTGGAAGATTGTCTAGCTTCACACAACATCTTGTGGAAGGGGTCGAGTCAATTGATGTGAAGAGTCAGCTAAGTGCCAATAGTAAGAATGTTTGTGATGGTTTAACAGCGTTTGGTGAACGCATCTTCCACTTTCCTAAAGGTTCCAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

35.69

Weight (kDa)

8.89

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AarI	CACCTGC	1 cut(s)	25
AasI	GACNNNNNNGTC	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	215
AccII	CGCG	2 cut(s)	243, 378
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	231
AcuI	CTGAAG	2 cut(s)	633, 637
AdeI	CACNNNGTG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	748
AfiI	CCNNNNNNNGG	4 cut(s)	145, 227, 545, 605
AgsI	TTSAA	2 cut(s)	238, 446
AjnI	CCWGG	2 cut(s)	598, 772
AloI	GAACNNNNNNTCC	2 cut(s)	966, 998
AluBI	AGCT	6 cut(s)	70, 340, 467, 635, 873, 925
AluI	AGCT	6 cut(s)	70, 340, 467, 635, 873, 925
Alw21I	GWGCWC	4 cut(s)	72, 342, 469, 537
Alw26I	GTCTC	3 cut(s)	52, 154, 316
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	3 cut(s)	126, 379, 608
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	3 cut(s)	60, 737, 841
ApoI	RAATTY	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	4 cut(s)	136, 596, 608, 767
AsuHPI	GGTGA	2 cut(s)	49, 983
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	136, 596, 767
BaeGI	GKGCMC	1 cut(s)	537
BanII	GRGCYC	3 cut(s)	72, 342, 469
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	4 cut(s)	72, 342, 469, 537
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	47, 749, 828
BccI	CCATC	3 cut(s)	516, 585, 947
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	600, 774
BcoDI	GTCTC	3 cut(s)	52, 154, 316
BfaI	CTAG	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	7 cut(s)	61, 210, 213, 288, 379, 738, 842
BlsI	GCNGC	7 cut(s)	62, 211, 214, 289, 380, 739, 843
BmcAI	AGTACT	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	600, 774
Bme18I	GGWCC	3 cut(s)	136, 596, 767
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	4 cut(s)	136, 596, 608, 767
BmiI	GGNNCC	3 cut(s)	527, 597, 1000
BmrFI	CCNGG	2 cut(s)	600, 774
BmrI	ACTGGG	2 cut(s)	322, 524
BmsI	GCATC	2 cut(s)	396, 987
BmuI	ACTGGG	2 cut(s)	322, 524
BpiI	GAAGAC	1 cut(s)	683
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 329, 361
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	2 cut(s)	52, 154
BsaJI	CCNNGG	4 cut(s)	123, 144, 300, 376
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 179, 209, 404, 434
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 227, 545, 605
Bse1I	ACTGG	3 cut(s)	328, 530, 855
BseBI	CCWGG	2 cut(s)	600, 774
BseDI	CCNNGG	4 cut(s)	123, 144, 300, 376
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	4 cut(s)	145, 227, 545, 605
BseMII	CTCAG	2 cut(s)	63, 213
BseNI	ACTGG	3 cut(s)	328, 530, 855
BseRI	GAGGAG	7 cut(s)	146, 181, 184, 187, 207, 210, 289
BseSI	GKGCMC	1 cut(s)	537
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	3 cut(s)	47, 749, 828
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	243, 378
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	3 cut(s)	128, 381, 610
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	4 cut(s)	72, 342, 469, 537
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	134, 228, 315, 382
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	145, 227, 545, 605
BsmAI	GTCTC	3 cut(s)	52, 154, 316
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	128, 381, 610
Bso31I	GGTCTC	2 cut(s)	52, 154
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	4 cut(s)	72, 342, 469, 537
Bsp143I	GATC	2 cut(s)	114, 304
BspANI	GGCC	3 cut(s)	128, 381, 610
BspCNI	CTCAG	2 cut(s)	62, 212
BspFNI	CGCG	2 cut(s)	243, 378
BspLI	GGNNCC	3 cut(s)	527, 597, 1000
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	312
BspTNI	GGTCTC	2 cut(s)	52, 154
BsrBI	CCGCTC	1 cut(s)	215
BsrI	ACTGG	3 cut(s)	328, 530, 855
BssECI	CCNNGG	4 cut(s)	123, 144, 300, 376
BssMI	GATC	2 cut(s)	114, 304
BssT1I	CCWWGG	2 cut(s)	123, 144
Bst2UI	CCWGG	2 cut(s)	600, 774
Bst4CI	ACNGT	2 cut(s)	715, 828
Bst6I	CTCTTC	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	637
BstDEI	CTNAG	3 cut(s)	49, 199, 926
BstDSI	CCRYGG	1 cut(s)	376
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	596
BstFNI	CGCG	2 cut(s)	243, 378
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	117, 307
BstMAI	GTCTC	3 cut(s)	52, 154, 316
BstMBI	GATC	2 cut(s)	114, 304
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 209, 247, 256, 284, 384, 734
BstNI	CCWGG	2 cut(s)	600, 774
BstSCI	CCNGG	2 cut(s)	598, 772
BstSLI	GKGCMC	1 cut(s)	537
BstUI	CGCG	2 cut(s)	243, 378
BstV1I	GCAGC	3 cut(s)	47, 749, 828
BstV2I	GAAGAC	1 cut(s)	683
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	128, 381, 610
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	596
BtsIMutI	CAGTG	5 cut(s)	335, 537, 661, 711, 862
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	637
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	136, 596, 608, 767
Cfr42I	CCGCGG	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	747
CviQI	GTAC	1 cut(s)	747
DdeI	CTNAG	3 cut(s)	49, 199, 926
DpnI	GATC	2 cut(s)	116, 306
DpnII	GATC	2 cut(s)	114, 304
DraIII	CACNNNGTG	1 cut(s)	830
DrdI	GACNNNNNNGTC	1 cut(s)	774
DseDI	GACNNNNNNGTC	1 cut(s)	774
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	3 cut(s)	70, 340, 467
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	123, 144
Eco24I	GRGCYC	3 cut(s)	72, 342, 469
Eco31I	GGTCTC	2 cut(s)	52, 154
Eco47I	GGWCC	3 cut(s)	136, 596, 767
Eco52I	CGGCCG	1 cut(s)	379
Eco53kI	GAGCTC	3 cut(s)	70, 340, 467
Eco57I	CTGAAG	2 cut(s)	633, 637
Eco88I	CYCGRG	1 cut(s)	335
EcoICRI	GAGCTC	3 cut(s)	70, 340, 467
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	598, 772
EcoT14I	CCWWGG	2 cut(s)	123, 144
EcoT38I	GRGCYC	3 cut(s)	72, 342, 469
ErhI	CCWWGG	2 cut(s)	123, 144
FaiI	YATR	7 cut(s)	428, 494, 516, 627, 734, 797, 836
FaqI	GGGAC	1 cut(s)	257
FauI	CCCGC	2 cut(s)	190, 232
Fnu4HI	GCNGC	7 cut(s)	61, 210, 213, 288, 379, 738, 842
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	3 cut(s)	72, 342, 469
Fsp4HI	GCNGC	7 cut(s)	61, 210, 213, 288, 379, 738, 842
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	7 cut(s)	61, 210, 213, 288, 379, 738, 842
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	3 cut(s)	128, 381, 610
HapII	CCGG	4 cut(s)	134, 228, 315, 382
HhaI	GCGC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	6 cut(s)	28, 40, 188, 309, 902, 919
HpaII	CCGG	4 cut(s)	134, 228, 315, 382
HphI	GGTGA	2 cut(s)	49, 983
Hpy166II	GTNNAC	5 cut(s)	412, 440, 535, 767, 974
Hpy188I	TCNGA	4 cut(s)	67, 114, 304, 349
Hpy188III	TCNNGA	3 cut(s)	14, 508, 546
Hpy8I	GTNNAC	5 cut(s)	412, 440, 535, 767, 974
Hpy99I	CGWCG	3 cut(s)	59, 407, 410
HpyAV	CCTTC	3 cut(s)	88, 174, 887
HpyCH4III	ACNGT	2 cut(s)	715, 828
HpyCH4V	TGCA	4 cut(s)	535, 698, 752, 844
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 209, 247, 256, 284, 384, 734
HpyF3I	CTNAG	3 cut(s)	49, 199, 926
HspAI	GCGC	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	114, 304
LmnI	GCTCC	7 cut(s)	67, 75, 220, 350, 384, 548, 632
Lsp1109I	GCAGC	3 cut(s)	47, 749, 828
LweI	GCATC	2 cut(s)	396, 987
MaeI	CTAG	1 cut(s)	870
MalI	GATC	2 cut(s)	116, 306
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	2 cut(s)	114, 304
MboII	GAAGA	6 cut(s)	17, 465, 683, 873, 928, 973
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	4 cut(s)	72, 342, 469, 537
MluCI	AATT	4 cut(s)	231, 392, 700, 906
MlyI	GAGTC	6 cut(s)	37, 49, 182, 318, 911, 928
MmeI	TCCRAC	2 cut(s)	568, 610
MseI	TTAA	1 cut(s)	959
MspA1I	CMGCKG	2 cut(s)	185, 378
MspI	CCGG	4 cut(s)	134, 228, 315, 382
MspR9I	CCNGG	2 cut(s)	600, 774
MunI	CAATTG	1 cut(s)	906
MvaI	CCWGG	2 cut(s)	600, 774
MvnI	CGCG	2 cut(s)	243, 378
MwoI	GCNNNNNNNGC	7 cut(s)	31, 209, 247, 256, 284, 384, 734
NdeII	GATC	2 cut(s)	114, 304
NlaIV	GGNNCC	3 cut(s)	527, 597, 1000
PaeR7I	CTCGAG	1 cut(s)	335
PaqCI	CACCTGC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	7 cut(s)	62, 211, 214, 289, 380, 739, 843
PleI	GAGTC	6 cut(s)	36, 48, 182, 317, 910, 927
PpsI	GAGTC	6 cut(s)	36, 48, 182, 317, 910, 927
PpuMI	RGGWCCY	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	3 cut(s)	72, 342, 469
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	598, 772
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	598, 772
PspN4I	GGNNCC	3 cut(s)	527, 597, 1000
PspPI	GGNCC	4 cut(s)	136, 596, 608, 767
PspPPI	RGGWCCY	1 cut(s)	596
PspXI	VCTCGAGB	1 cut(s)	335
RsaI	GTAC	1 cut(s)	748
RsaNI	GTAC	1 cut(s)	747
SacI	GAGCTC	3 cut(s)	72, 342, 469
SacII	CCGCGG	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	959
SatI	GCNGC	7 cut(s)	61, 210, 213, 288, 379, 738, 842
Sau3AI	GATC	2 cut(s)	114, 304
Sau96I	GGNCC	4 cut(s)	136, 596, 608, 767
ScaI	AGTACT	1 cut(s)	748
SchI	GAGTC	6 cut(s)	37, 49, 182, 318, 911, 928
ScrFI	CCNGG	2 cut(s)	600, 774
SduI	GDGCHC	4 cut(s)	72, 342, 469, 537
SfaNI	GCATC	2 cut(s)	396, 987
Sfr274I	CTCGAG	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	379
SgrBI	CCGCGG	1 cut(s)	379
SinI	GGWCC	3 cut(s)	136, 596, 767
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	254, 335
SmoI	CTYRAG	2 cut(s)	254, 335
Sse9I	AATT	4 cut(s)	231, 392, 700, 906
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	3 cut(s)	72, 342, 469
StyD4I	CCNGG	2 cut(s)	598, 772
StyI	CCWWGG	2 cut(s)	123, 144
TaaI	ACNGT	2 cut(s)	715, 828
TaqI	TCGA	5 cut(s)	105, 307, 336, 354, 900
TasI	AATT	4 cut(s)	231, 392, 700, 906
TatI	WGTACW	1 cut(s)	746
TauI	GCSGC	4 cut(s)	212, 215, 290, 381
Tru1I	TTAA	1 cut(s)	959
Tru9I	TTAA	1 cut(s)	959
TscAI	CASTG	5 cut(s)	335, 537, 661, 718, 862
TseI	GCWGC	3 cut(s)	60, 737, 841
TspDTI	ATGAA	2 cut(s)	70, 531
TspRI	CASTG	5 cut(s)	335, 537, 661, 718, 862
Van91I	CCANNNNNTGG	1 cut(s)	545
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	3 cut(s)	136, 596, 767
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	231
XhoI	CTCGAG	1 cut(s)	335
XspI	CTAG	1 cut(s)	870
ZrmI	AGTACT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.