Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Forward (+)

24986061 .. 24988878

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023533

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACTCGTCGGAGGATGGAAGAATATCCAGAGGAAATGCGGAGTCCGCCGGTGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCCACTCCCTCGACCCTCCGATCAACACCTTGGCCTTGCCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTTCCCCCAAGCCCAATCCCGCCGACTCCTCCTCCTCAGCCTCCGCCGCCGCTCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGGGTCTCCGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAAATCGACAATCTCAAGGGGCTTATCCGCGGCCGGAGCATCAAATTGGTCATCGTCGTCGTCAACTCCCACTCCACTGGTGACGTGGCAGAACGACATAGGCAGAATTGCAAATTGTTGGATGATTTAAGAATTCTATTGATTCTCAGGTACATATACTGCTCCTCAGCTGGTGTTTATCTCAAATCTGATCAATTGCCTCACTTTGAGCTCAAGTACTTTGAGGATACTCTTCCAGCTCAATTATTGTGGATCTGCTCTATATTAAGGTTTCGTGGCCATAGGACGTTAATATCCAGATACTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

225

Amino Acids

25.08

Weight (kDa)

9.16

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	2 cut(s)	258, 393
AclWI	GGATC	2 cut(s)	327, 623
AcoI	YGGCCR	2 cut(s)	394, 640
AcsI	RAATTY	2 cut(s)	246, 495
AfaI	GTAC	2 cut(s)	515, 581
AfiI	CCNNNNNNNGG	3 cut(s)	160, 242, 321
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	448
AluBI	AGCT	5 cut(s)	85, 355, 533, 574, 602
AluI	AGCT	5 cut(s)	85, 355, 533, 574, 602
Alw21I	GWGCWC	3 cut(s)	87, 357, 576
Alw26I	GTCTC	3 cut(s)	67, 169, 331
AlwI	GGATC	2 cut(s)	327, 623
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	141, 339, 394, 640
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	246, 495
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	151, 340
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	64, 455
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	642
BanII	GRGCYC	3 cut(s)	87, 357, 576
Bbv12I	GWGCWC	3 cut(s)	87, 357, 576
BbvCI	CCTCAGC	2 cut(s)	214, 529
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	583
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	67, 169, 331
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	5 cut(s)	76, 225, 228, 303, 394
BlsI	GCNGC	5 cut(s)	77, 226, 229, 304, 395
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	151, 340
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	337
BplI	GAGNNNNNCTC	4 cut(s)	74, 106, 344, 376
Bpu10I	CCTNAGC	2 cut(s)	214, 529
BpuEI	CTTGAG	3 cut(s)	254, 362, 560
BpuMI	CCSGG	1 cut(s)	338
BsaI	GGTCTC	3 cut(s)	67, 169, 331
BsaJI	CCNNGG	4 cut(s)	138, 159, 315, 391
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 194, 224, 419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 242, 321
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	343, 445
BseDI	CCNNGG	4 cut(s)	138, 159, 315, 391
BseGI	GGATG	2 cut(s)	21, 490
BseLI	CCNNNNNNNGG	3 cut(s)	160, 242, 321
BseMII	CTCAG	4 cut(s)	78, 228, 523, 543
BseNI	ACTGG	2 cut(s)	343, 445
BseRI	GAGGAG	8 cut(s)	161, 196, 199, 202, 222, 225, 304, 517
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	62
Bsh1236I	CGCG	2 cut(s)	258, 393
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	4 cut(s)	143, 341, 396, 642
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	3 cut(s)	87, 357, 576
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	6 cut(s)	50, 149, 243, 330, 338, 397
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	160, 242, 321
BsmAI	GTCTC	3 cut(s)	67, 169, 331
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	143, 341, 396, 642
Bso31I	GGTCTC	3 cut(s)	67, 169, 331
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	87, 357, 576
Bsp143I	GATC	4 cut(s)	129, 319, 553, 615
BspANI	GGCC	4 cut(s)	143, 341, 396, 642
BspCNI	CTCAG	4 cut(s)	77, 227, 522, 542
BspFNI	CGCG	2 cut(s)	258, 393
BspPI	GGATC	2 cut(s)	327, 623
BspTNI	GGTCTC	3 cut(s)	67, 169, 331
BsrBI	CCGCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	343, 445
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	138, 159, 315, 391
BssMI	GATC	4 cut(s)	129, 319, 553, 615
BssT1I	CCWWGG	2 cut(s)	138, 159
Bst6I	CTCTTC	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	64, 214, 509, 529
BstDSI	CCRYGG	1 cut(s)	391
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	21, 490
BstFNI	CGCG	2 cut(s)	258, 393
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	4 cut(s)	132, 322, 556, 618
BstMAI	GTCTC	3 cut(s)	67, 169, 331
BstMBI	GATC	4 cut(s)	129, 319, 553, 615
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 224, 262, 271, 299, 399
BstSCI	CCNGG	1 cut(s)	336
BstUI	CGCG	2 cut(s)	258, 393
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	615
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	615
BstZI	CGGCCG	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	4 cut(s)	143, 341, 396, 642
BtgI	CCRYGG	1 cut(s)	391
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	21, 490
BtsIMutI	CAGTG	2 cut(s)	350, 438
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	151, 340
Cfr42I	CCGCGG	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	514, 580
CspCI	CAANNNNNGTGG	2 cut(s)	593, 628
CviQI	GTAC	2 cut(s)	514, 580
DdeI	CTNAG	4 cut(s)	64, 214, 509, 529
DpnI	GATC	4 cut(s)	131, 321, 555, 617
DpnII	GATC	4 cut(s)	129, 319, 553, 615
EaeI	YGGCCR	2 cut(s)	394, 640
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
EciI	GGCGGA	2 cut(s)	36, 211
Ecl136II	GAGCTC	3 cut(s)	85, 355, 574
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	138, 159
Eco24I	GRGCYC	3 cut(s)	87, 357, 576
Eco31I	GGTCTC	3 cut(s)	67, 169, 331
Eco47I	GGWCC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	394
Eco53kI	GAGCTC	3 cut(s)	85, 355, 574
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	3 cut(s)	85, 355, 574
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	138, 159
EcoT38I	GRGCYC	3 cut(s)	87, 357, 576
ErhI	CCWWGG	2 cut(s)	138, 159
FaiI	YATR	5 cut(s)	462, 518, 520, 626, 645
FaqI	GGGAC	1 cut(s)	272
FauI	CCCGC	3 cut(s)	205, 247, 298
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	76, 225, 228, 303, 394
FokI	GGATG	2 cut(s)	28, 497
FriOI	GRGCYC	3 cut(s)	87, 357, 576
Fsp4HI	GCNGC	5 cut(s)	76, 225, 228, 303, 394
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	76, 225, 228, 303, 394
HaeIII	GGCC	4 cut(s)	143, 341, 396, 642
HapII	CCGG	6 cut(s)	50, 149, 243, 330, 338, 397
HhaI	GCGC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	5 cut(s)	4, 43, 55, 203, 505
HpaII	CCGG	6 cut(s)	50, 149, 243, 330, 338, 397
HphI	GGTGA	2 cut(s)	64, 455
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	6 cut(s)	12, 82, 129, 319, 364, 553
Hpy188III	TCNNGA	2 cut(s)	29, 660
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	4 cut(s)	12, 74, 422, 425
HpyAV	CCTTC	2 cut(s)	103, 189
HpyCH4IV	ACGT	2 cut(s)	447, 650
HpyCH4V	TGCA	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 224, 262, 271, 299, 399
HpyF3I	CTNAG	4 cut(s)	64, 214, 509, 529
HpySE526I	ACGT	2 cut(s)	447, 650
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	553
KspI	CCGCGG	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	129, 319, 553, 615
LmnI	GCTCC	6 cut(s)	82, 90, 235, 365, 399, 530
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	411
MaeII	ACGT	2 cut(s)	447, 650
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	4 cut(s)	131, 321, 555, 617
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	4 cut(s)	129, 319, 553, 615
MboII	GAAGA	2 cut(s)	32, 587
MfeI	CAATTG	1 cut(s)	557
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	3 cut(s)	87, 357, 576
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	7 cut(s)	246, 407, 469, 476, 495, 557, 605
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	3 cut(s)	52, 64, 197
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	3 cut(s)	491, 629, 653
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	393, 533
MspI	CCGG	6 cut(s)	50, 149, 243, 330, 338, 397
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	557
MvnI	CGCG	2 cut(s)	258, 393
MwoI	GCNNNNNNNGC	6 cut(s)	46, 224, 262, 271, 299, 399
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	4 cut(s)	129, 319, 553, 615
NmuCI	GTSAC	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	5 cut(s)	77, 226, 229, 304, 395
PleI	GAGTC	3 cut(s)	51, 63, 197
PpsI	GAGTC	3 cut(s)	51, 63, 197
Psp124BI	GAGCTC	3 cut(s)	87, 357, 576
PspPI	GGNCC	2 cut(s)	151, 340
PspXI	VCTCGAGB	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	515, 581
RsaNI	GTAC	2 cut(s)	514, 580
SacI	GAGCTC	3 cut(s)	87, 357, 576
SacII	CCGCGG	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	491, 629, 653
SatI	GCNGC	5 cut(s)	76, 225, 228, 303, 394
Sau3AI	GATC	4 cut(s)	129, 319, 553, 615
Sau96I	GGNCC	2 cut(s)	151, 340
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	3 cut(s)	52, 64, 197
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	3 cut(s)	87, 357, 576
SfaNI	GCATC	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	350
Sfr303I	CCGCGG	1 cut(s)	394
SgrAI	CRCCGGYG	1 cut(s)	49
SgrBI	CCGCGG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	4 cut(s)	269, 350, 377, 575
SmoI	CTYRAG	4 cut(s)	269, 350, 377, 575
Sse9I	AATT	7 cut(s)	246, 407, 469, 476, 495, 557, 605
SstI	GAGCTC	3 cut(s)	87, 357, 576
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	138, 159
TaiI	ACGT	2 cut(s)	450, 653
TaqI	TCGA	3 cut(s)	120, 351, 369
TasI	AATT	7 cut(s)	246, 407, 469, 476, 495, 557, 605
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	4 cut(s)	227, 230, 305, 396
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	3 cut(s)	491, 629, 653
Tru9I	TTAA	3 cut(s)	491, 629, 653
TscAI	CASTG	2 cut(s)	350, 445
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	85
TspRI	CASTG	2 cut(s)	350, 445
VpaK11BI	GGWCC	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	246, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.