Rw6G029030

Cadmium-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005508
Physical Location & Seq
Reverse (-)
53158304 .. 53159365
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029030.1

Sequence Viewer

Length: 438 bp
ATGGGTAGTGTGATGCAGTTGAAGAATTTGAAAGAAGAGGAGGAGCTAATAGGCATTGGTTGGGAAAGATGCAACCCAGTGCACCCAACCTCTGGAGCATCTTGGGGTTTGGGAATAGGCATTGGTTGTGGTGTTGGATGGGGTTCTGGTTTTGGGCCTGAAGTGATTGGCTATGTTCGAGCTGGCTGTGGTGTTGGCTTCAGTGTGGTTTTAACTCTGCTTGGTGTTGGTATTGGTCTTCCTGCAAATTGGCTCTACAGAGTTCCTTATGATGCTGTGATGGCAGCAAGCAGTGCCGCATTGAGGCTTGGCAGACCTCCTGGTCTTGTTTTCCCGAAAAAGTATAGCAGGAGAAAGTTGGAACCTTGTGACACAGGCCTGCAAAGAGAAGCTAGTGGAAGATTGTATAGCTTCAAGCAACATCTTGTGGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.43

Weight (kDa)

9.0

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 92
AciI CCGC 1 cut(s) 297
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 2 cut(s) 180, 184
AfiI CCNNNNNNNGG 2 cut(s) 92, 303
AgsI TTSAA 3 cut(s) 22, 31, 415
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 4 cut(s) 46, 182, 392, 411
AluI AGCT 4 cut(s) 46, 182, 392, 411
Alw21I GWGCWC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 80
AoxI GGCC 2 cut(s) 155, 376
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 132, 274
BciT130I CCWGG 1 cut(s) 321
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 256
BisI GCNGC 2 cut(s) 285, 297
BlsI GCNGC 2 cut(s) 286, 298
Bme1390I CCNGG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 4 cut(s) 3, 59, 107, 262
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 303
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 92, 303
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 53, 56
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 2 cut(s) 157, 378
BsiHKAI GWGCWC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 92, 303
BsnI GGCC 2 cut(s) 157, 378
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 157, 378
BspLI GGNNCC 1 cut(s) 363
BsrI ACTGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 184, 289, 380
BstF5I GGATG 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 281, 293
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 157, 378
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 84, 208, 298
Cac8I GCNNGC 3 cut(s) 184, 289, 380
Cfr13I GGNCC 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 378
Eco57I CTGAAG 2 cut(s) 180, 184
EcoRII CCWGG 1 cut(s) 319
FaiI YATR 4 cut(s) 174, 270, 345, 408
Fnu4HI GCNGC 2 cut(s) 285, 297
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 285, 297
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 285, 297
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 2 cut(s) 157, 378
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 93, 334
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 16, 72, 82, 245, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 293
LmnI GCTCC 2 cut(s) 43, 95
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 4 cut(s) 3, 59, 107, 262
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 368
MboII GAAGA 4 cut(s) 34, 47, 230, 411
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 25, 247
MmeI TCCRAC 2 cut(s) 115, 339
MnlI CCTC 5 cut(s) 31, 34, 100, 297, 327
MseI TTAA 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 281, 293
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 368
PceI AGGCCT 1 cut(s) 378
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 2 cut(s) 286, 298
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 2 cut(s) 285, 297
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 48, 92, 184, 319, 367, 394, 413, 436
SfaNI GCATC 4 cut(s) 3, 59, 107, 262
SfcI CTRYAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 25, 247
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 1 cut(s) 297
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 319
TaqI TCGA 1 cut(s) 178
TasI AATT 2 cut(s) 25, 247
TauI GCSGC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 3 cut(s) 84, 208, 298
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 368
TspRI CASTG 3 cut(s) 84, 208, 298
Van91I CCANNNNNTGG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 80
XapI RAATTY 1 cut(s) 25
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.