Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Forward (+)

15231800 .. 15232474

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCAATCAAAAGGAATGTCCAGTTTAGAGTAATCTCTAAACTCAAAAGAAAAGAAATGGAGCTAATAGGCATTGGTTGGGAAAGATGCAACCCAGTGCACCCAACCTCTGGAGCATTTTGGGGTTTGGGAATAGGCATTGGTTGTGGTGTTGGATGGGGTTCTGGTTTTGGGCCTGAAGTGATTGGCTATGTTCGAGCTGGCTGTGGTGTTGGCTTCAGTGTGGTTTTAACTCTGCTTGGTGTTGGTGTTGGTCTTCCTGCAAATTGGCTCTACAGAGTTCCTTATGATGCTGTGATGGCAGCAAGCAGTGCCGCATTGAAGCTTGGCAGACCTCCTGGTCTTGTTTTCCCGAAAAGTATAGCAGGAGAAAGTTGGAACCTTGTGACACAGGCCTGCAAAGAGAAGCTAGTGGAAGATTGTATAGCTTCAAGCAACATCTTGTGGAAGGTTGAGTCAATTGATATGAAAAGTCAGCTAAGTGCCAATGCTAAGACTGTTTGTGATGGTGTAACAGCATTTGGTGAATTTCATCTTCCACTTTCCCGAAGGTTCCAAAGATTGACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.39

Weight (kDa)

9.38

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	2 cut(s)	198, 202
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	322, 432
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	6 cut(s)	64, 200, 325, 409, 428, 478
AluI	AGCT	6 cut(s)	64, 200, 325, 409, 428, 478
Alw21I	GWGCWC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	173, 393
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	527
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	3 cut(s)	150, 292, 500
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	2 cut(s)	303, 315
BlsI	GCNGC	2 cut(s)	304, 316
Bme1390I	CCNGG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	380, 554
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	77, 280
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	22, 95
BseBI	CCWGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	22, 95
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	2 cut(s)	175, 395
BsiHKAI	GWGCWC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	110
BsnI	GGCC	2 cut(s)	175, 395
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	175, 395
BspLI	GGNNCC	2 cut(s)	380, 554
BsrI	ACTGG	2 cut(s)	22, 95
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	202, 307, 397
BstDEI	CTNAG	2 cut(s)	479, 492
BstF5I	GGATG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 311
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	175, 395
BtsCI	GGATG	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	102, 226, 316
Cac8I	GCNNGC	3 cut(s)	202, 307, 397
Cfr13I	GGNCC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	479, 492
DrdI	GACNNNNNNGTC	1 cut(s)	339
DseDI	GACNNNNNNGTC	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	395
Eco57I	CTGAAG	2 cut(s)	198, 202
EcoRII	CCWGG	1 cut(s)	337
FaiI	YATR	5 cut(s)	192, 288, 362, 425, 467
Fnu4HI	GCNGC	2 cut(s)	303, 315
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	303, 315
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	2 cut(s)	303, 315
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	175, 395
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	455
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	111, 352, 546
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	442, 543
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	90, 100, 263, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 311
HpyF3I	CTNAG	2 cut(s)	479, 492
LmnI	GCTCC	2 cut(s)	61, 113
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	77, 280
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	385, 511
MboII	GAAGA	3 cut(s)	248, 428, 527
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	265, 459, 527
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	133, 356
MnlI	CCTC	2 cut(s)	118, 345
MseI	TTAA	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	299, 311
NlaIV	GGNNCC	2 cut(s)	380, 554
NmuCI	GTSAC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	304, 316
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	380, 554
PspPI	GGNCC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	303, 315
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	77, 280
SfcI	CTRYAG	1 cut(s)	274
Sse9I	AATT	3 cut(s)	265, 459, 527
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	410
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	196
TasI	AATT	3 cut(s)	265, 459, 527
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	3 cut(s)	102, 226, 316
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	482, 521
TspRI	CASTG	3 cut(s)	102, 226, 316
Van91I	CCANNNNNTGG	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	527
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.