Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005508

Physical Location & Seq

Genomic Coordinates Reverse (-)

57263943 .. 57264749

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATAGATTTATATGGTTGGGAAGTGACCATTTCAAAGAGGAAGAACTCTGCAGGACCAGAGCTCGCATCAAAGGAGCTAATAGGCATTGGTTGGGAAAGATGCAACCCAGTGCACCCAACCTCTGGAGCATCTTGGGGTTTGGGAATAGGCATTGGTTGTGGTGTTGGATGGGGTTCTGGTTTTGGGCCTGAAGTGATTGGCTATGTTCGAGCTGGCTGTGGTGTTGGCTTCAGTGTGGTTTTAACTCTGCTTGGTGTTGGAATTGGTCTTCCTGCAAATTGGCTCTACAGAGTTCCTTATGATGCTGTGATGGCAGCAAGCAGTGCCGCATTGAGGCTTGGCAGACCTCCTGGTCTTGTTTTCCCGAAAAGTATAGCAGGAGAAAGTTGGAACCTTGTGACACAGGCCTGCAAAGAGAAGCTAGTGGAAGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.27

Weight (kDa)

7.64

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19070 AT4G19070
fragaria_vesca	FvH4_5g23880 FvH4_5g23880 FvH4_5g23880
malus_domestica	MD06G1014600.v1.1
prunus_persica	Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1 Prupe.5G021500_v2.0.a1
pyrus_communis	pycom06g01180
rosa_chinensis	RchiOBHm_Chr7g0213271
rosa_laevigata	RLG00000002816 RLG00000003095 RLG00000012098 RLG00000023533
rosa_multiflora	Rmu_co8323751.1_g000001 Rmu_sc0002226.1_g000016 Rmu_ssc0000084.1_g000027
rosa_roxburghii	Rroxscaffold_3G00246110
rosa_rugosa	Rorug07G0140900 Rorug07G0141000
rosa_samantha	Rh6BG340200 Rh6BG375900 Rh7AG272500 Rh7CG291900 Rh7DG280400
rosa_wichuraiana	Rw6G029030 Rw7G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	1 cut(s)	330
AcuI	CTGAAG	2 cut(s)	213, 217
AfiI	CCNNNNNNNGG	2 cut(s)	125, 336
AgsI	TTSAA	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	4 cut(s)	64, 79, 215, 424
AluI	AGCT	4 cut(s)	64, 79, 215, 424
Alw21I	GWGCWC	2 cut(s)	66, 117
Alw44I	GTGCAC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	188, 408
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	56, 188
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	66, 117
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	165, 307
BciT130I	CCWGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	51, 289
BisI	GCNGC	2 cut(s)	318, 330
BlsI	GCNGC	2 cut(s)	319, 331
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	56, 188
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	4 cut(s)	77, 92, 140, 295
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 336
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	125, 336
BseNI	ACTGG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	2 cut(s)	190, 410
BsiHKAI	GWGCWC	2 cut(s)	66, 117
BslI	CCNNNNNNNGG	2 cut(s)	125, 336
BsnI	GGCC	2 cut(s)	190, 410
Bsp1286I	GDGCHC	2 cut(s)	66, 117
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	2 cut(s)	190, 410
BspLI	GGNNCC	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	4 cut(s)	66, 217, 322, 412
BstF5I	GGATG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 326
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	2 cut(s)	51, 289
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	190, 410
BtsCI	GGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	3 cut(s)	117, 241, 331
Cac8I	GCNNGC	4 cut(s)	66, 217, 322, 412
Cfr13I	GGNCC	2 cut(s)	56, 188
DrdI	GACNNNNNNGTC	1 cut(s)	354
DseDI	GACNNNNNNGTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	213, 217
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	66
FaiI	YATR	6 cut(s)	13, 15, 207, 303, 377, 439
Fnu4HI	GCNGC	2 cut(s)	318, 330
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	318, 330
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	318, 330
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	190, 410
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	2 cut(s)	126, 367
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	53, 105, 115, 278, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 326
LmnI	GCTCC	2 cut(s)	76, 128
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	4 cut(s)	77, 92, 140, 295
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	25, 400
MboII	GAAGA	2 cut(s)	55, 263
MhlI	GDGCHC	2 cut(s)	66, 117
MluCI	AATT	2 cut(s)	264, 280
MmeI	TCCRAC	3 cut(s)	148, 241, 371
MnlI	CCTC	4 cut(s)	33, 133, 330, 360
MseI	TTAA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	314, 326
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	2 cut(s)	25, 400
PceI	AGGCCT	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	319, 331
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	2 cut(s)	56, 188
PstI	CTGCAG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	2 cut(s)	318, 330
Sau96I	GGNCC	2 cut(s)	56, 188
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	66, 117
SetI	ASST	7 cut(s)	66, 81, 125, 217, 352, 399, 426
SfaNI	GCATC	4 cut(s)	77, 92, 140, 295
SfcI	CTRYAG	2 cut(s)	51, 289
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	2 cut(s)	264, 280
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	352
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	264, 280
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	3 cut(s)	117, 241, 331
TseFI	GTSAC	2 cut(s)	25, 400
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	2 cut(s)	25, 400
TspRI	CASTG	3 cut(s)	117, 241, 331
Van91I	CCANNNNNTGG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	56
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.