FvH4_5g23880

Cadmium-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005508
Physical Location & Seq
Reverse (-)
15172973 .. 15176722
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23880.t2

Sequence Viewer

Length: 525 bp
ATGATTATAAAAGGAGTGTTCAGGAGGTATGAAAGATGGAACCCAGTGCACCCAACCTCTGGGGCATTTTGGGGTTTGGGAATTGGCATTGGTTGTGGTGTTGGATGGGGTCCTGGTTTTGGTCCTGAAGTTATTGGCTATGTTGGAGCTGGCTGTGGTGTTGGCTTCAGTGTGGGTTTCACCCTGCTTGGTGTTGGTATTGGTCTTCCTGCAAATTGGCTCTACACTGTTCCTTGTGATGCTGTTATGGCAGCAAGAAGTACTGCATTGAGGCTTGGCAGACCTCCTGGTCTTGTTTTCCCCAAAAGTATGGCAGGAGAGAGTTGGGATAAAATAGCGCCATGTGTCACAGGCCTGCGAAGAGAAGCCAGTGGGAGATTGTCTAGCTTCAAGCAACATCTTGTGGAAGGGGTCGAGTCAATTGATGTGAAGAGTCAGCTGAGTGCCAATACTAAGACAGTTTGTGACGGTTTTACAGCGTTTGGTGAACGTGTCTTCCACTTTCCTAGAGGTTCCAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.47

Weight (kDa)

9.46

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AasI GACNNNNNNGTC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 147, 151
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 2 cut(s) 59, 119
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 2 cut(s) 112, 286
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 149, 387, 439
AluI AGCT 3 cut(s) 149, 387, 439
Alw21I GWGCWC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 47
AoxI GGCC 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 110, 122
AsuHPI GGTGA 2 cut(s) 172, 497
AvaII GGWCC 2 cut(s) 110, 122
BaeGI GKGCMC 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 197, 487
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 30, 99
BciT130I CCWGG 2 cut(s) 114, 288
BfaI CTAG 2 cut(s) 384, 507
BfoI RGCGCY 1 cut(s) 341
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 114, 288
Bme18I GGWCC 2 cut(s) 110, 122
BmgT120I GGNCC 2 cut(s) 110, 122
BmiI GGNNCC 3 cut(s) 41, 111, 514
BmrFI CCNGG 2 cut(s) 114, 288
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 2 cut(s) 197, 487
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 119
Bse1I ACTGG 2 cut(s) 44, 369
BseBI CCWGG 2 cut(s) 114, 288
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 59, 119
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 2 cut(s) 44, 369
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 59, 119
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 51
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 432
BspLI GGNNCC 3 cut(s) 41, 111, 514
BsrI ACTGG 2 cut(s) 44, 369
Bst2UI CCWGG 2 cut(s) 114, 288
Bst4CI ACNGT 3 cut(s) 229, 460, 470
Bst6I CTCTTC 2 cut(s) 355, 425
BstC8I GCNNGC 2 cut(s) 151, 356
BstDEI CTNAG 2 cut(s) 440, 453
BstF5I GGATG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 2 cut(s) 114, 288
BstSCI CCNGG 2 cut(s) 112, 286
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 2 cut(s) 197, 487
BstXI CCANNNNNNTGG 1 cut(s) 310
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 4 cut(s) 51, 175, 225, 376
Cac8I GCNNGC 2 cut(s) 151, 356
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 110, 122
Csp6I GTAC 1 cut(s) 261
CviAII CATG 1 cut(s) 342
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 2 cut(s) 440, 453
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 355, 425
EarI CTCTTC 2 cut(s) 355, 425
Eco147I AGGCCT 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 110, 122
Eco57I CTGAAG 2 cut(s) 147, 151
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 112, 286
FaeI CATG 1 cut(s) 345
FaiI YATR 6 cut(s) 8, 30, 141, 248, 311, 343
FatI CATG 1 cut(s) 341
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 384, 507
GlaI GCGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 1 cut(s) 354
HhaI GCGC 1 cut(s) 340
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 2 cut(s) 416, 433
HphI GGTGA 2 cut(s) 172, 497
Hpy166II GTNNAC 2 cut(s) 49, 488
Hpy188III TCNNGA 2 cut(s) 22, 125
Hpy8I GTNNAC 2 cut(s) 49, 488
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 3 cut(s) 229, 460, 470
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 3 cut(s) 49, 212, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 440, 453
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 384, 507
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 346, 464
MboII GAAGA 4 cut(s) 197, 372, 442, 487
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 81, 214, 420
MlyI GAGTC 2 cut(s) 425, 442
MmeI TCCRAC 2 cut(s) 82, 124
MnlI CCTC 5 cut(s) 18, 67, 264, 294, 503
MspA1I CMGCKG 1 cut(s) 439
MspR9I CCNGG 2 cut(s) 114, 288
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 2 cut(s) 114, 288
MwoI GCNNNNNNNGC 1 cut(s) 248
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 3 cut(s) 41, 111, 514
NmuCI GTSAC 2 cut(s) 346, 464
PceI AGGCCT 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 424, 441
PpsI GAGTC 2 cut(s) 424, 441
PpuMI RGGWCCY 1 cut(s) 110
PsiI TTATAA 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 112, 286
PspGI CCWGG 2 cut(s) 112, 286
PspN4I GGNNCC 3 cut(s) 41, 111, 514
PspPI GGNCC 2 cut(s) 110, 122
PspPPI RGGWCCY 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 439
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SatI GCNGC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 110, 122
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 2 cut(s) 425, 442
ScrFI CCNGG 2 cut(s) 114, 288
SduI GDGCHC 1 cut(s) 51
SetI ASST 8 cut(s) 29, 59, 151, 286, 389, 441, 493, 514
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 2 cut(s) 110, 122
Sse9I AATT 3 cut(s) 81, 214, 420
SseBI AGGCCT 1 cut(s) 354
SspMI CTAG 2 cut(s) 384, 507
StuI AGGCCT 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 112, 286
TaaI ACNGT 3 cut(s) 229, 460, 470
TaiI ACGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 81, 214, 420
TatI WGTACW 1 cut(s) 260
TscAI CASTG 4 cut(s) 51, 175, 232, 376
TseFI GTSAC 2 cut(s) 346, 464
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 346, 464
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 4 cut(s) 51, 175, 232, 376
Van91I CCANNNNNTGG 1 cut(s) 59
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 110, 122
XspI CTAG 2 cut(s) 384, 507
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.