AT4G19160
ERF Family

Transglutaminase-like superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007426
Physical Location & Seq
Forward (+)
10477184 .. 10480212
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19160.2

Sequence Viewer

Length: 939 bp
ATGAAGGAGAGGGAAAGTGTACAAGATCAGTCTGATCCGAGTGAGACAGACTCTGAGGAGCTATTGCAGTTAGATGGAAAGAGTATATCTGAGTGGGTGAGTGAAATAGATGCAATTTCCAAAGAAGTAGAGGCAGAGTTAGTCTCACGAGATATCGGCTGTCACTTGGTTCAAGTTCTTGAAGCTGTAAATACAGTTCTCTTCGATCTGAGAGGCTTCAAGAGGACATCTATTACTTTAGACCCGGAGAATTCCTACCTTCACTCTGTACTTAACTGTAGATGCAGCACTGCGTTTCTGATTAGTGTAATATACATTGAAGTTTGTAAGCGCCTGAATGTACCAATTGTTGGATCTCCAGTTGGGGAAGATTTTCTGATTTGGCCTAAAACGGAGTATCCTGAGGAACTCTTTAAAGCAACTTCAGGACAGAGCTTGTTCTCTATTGTCAATGGAAGGTGTGTTGATGATCCTGGATCAATGGCATCAGACTTAACTGCAAAATCACTTCAAGACCTCGACATGGCAACAAACAGAGACATTATAGGGATTGCTCTAGCCAATTTGATTAGGCTTCACTGGAGACGTGCTTCTAAGTCATCCCATGGACTTATGCTGACTTCTCCTCTTAGTCAACTTAACAACATCAGTAGTTCTAATTTCCCATTGTTGCGGCCTCAAGATCTTAGGTTGGCTATTGCGGCTGCAGAAAGGTTGTTGATTTTGCAACCTCATAACTGGGCACTTCGCAGAGACCTTGGTATGATGCTGTACTACGACAGGCAATATGGAGAGGCGGTACAAGAGCTGAGCATATGTATGGCATTTGCTCCTCCTGAAGAAGAAGCTGTGTTGGAGCCATTTGTAGAAAGACTTCATCTCCTTCGTCTCATATCTTCATTGAAGCCTCTTGGTTCTGATCGCTTGACCGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_9 Transglut_core2

Protein Analysis

312

Amino Acids

34.95

Weight (kDa)

4.93

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 173 - 325 1.5e-24 Transglutaminase-like superfamily
TPR_9 PF13371 365 - 422 1.5e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 3 cut(s) 673, 701, 797
AclWI GGATC 4 cut(s) 29, 361, 464, 484
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 2 cut(s) 408, 858
AfaI GTAC 5 cut(s) 21, 270, 342, 773, 801
AfiI CCNNNNNNNGG 2 cut(s) 350, 523
AgsI TTSAA 6 cut(s) 173, 182, 220, 320, 512, 904
AjiI CACGTC 1 cut(s) 587
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 5 cut(s) 61, 185, 435, 808, 848
AluI AGCT 5 cut(s) 61, 185, 435, 808, 848
Alw26I GTCTC 6 cut(s) 38, 148, 531, 577, 747, 893
AlwI GGATC 4 cut(s) 29, 361, 464, 484
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 2 cut(s) 383, 674
ApeKI GCWGC 2 cut(s) 285, 704
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 2 cut(s) 372, 873
AspLEI GCGC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 745
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BauI CACGAG 1 cut(s) 147
BbvI GCAGC 2 cut(s) 297, 691
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 1 cut(s) 408
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 6 cut(s) 38, 148, 531, 577, 747, 893
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 2 cut(s) 277, 705
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 1 cut(s) 408
BglII AGATCT 1 cut(s) 682
BisI GCNGC 4 cut(s) 286, 674, 702, 705
BlpI GCTNAGC 1 cut(s) 809
BlsI GCNGC 4 cut(s) 287, 675, 703, 706
Bme1390I CCNGG 2 cut(s) 245, 474
BmgBI CACGTC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 858
BmrFI CCNGG 2 cut(s) 245, 474
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 4 cut(s) 100, 272, 494, 756
BmuI ACTGGG 1 cut(s) 748
BplI GAGNNNNNCTC 4 cut(s) 35, 67, 128, 160
BpmI CTGGAG 2 cut(s) 342, 601
Bpu1102I GCTNAGC 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 663
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 747
BsaJI CCNNGG 2 cut(s) 604, 757
BsaXI ACNNNNNCTCC 4 cut(s) 783, 813, 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 523
Bse1I ACTGG 3 cut(s) 359, 584, 743
Bse21I CCTNAGG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 604, 757
BseGI GGATG 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 350, 523
BseMII CTCAG 5 cut(s) 45, 81, 200, 393, 800
BseNI ACTGG 3 cut(s) 359, 584, 743
BseRI GAGGAG 3 cut(s) 71, 615, 822
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 2 cut(s) 297, 691
BshFI GGCC 2 cut(s) 385, 676
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 350, 523
BsmAI GTCTC 6 cut(s) 38, 148, 531, 577, 747, 893
BsmBI CGTCTC 2 cut(s) 577, 893
BsnI GGCC 2 cut(s) 385, 676
Bso31I GGTCTC 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 745
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
Bsp1720I GCTNAGC 1 cut(s) 809
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 3 cut(s) 673, 701, 797
BspANI GGCC 2 cut(s) 385, 676
BspCNI CTCAG 5 cut(s) 46, 82, 201, 394, 801
BspLI GGNNCC 1 cut(s) 858
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 4 cut(s) 29, 361, 464, 484
BspTNI GGTCTC 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 3 cut(s) 359, 584, 743
BssECI CCNNGG 2 cut(s) 604, 757
BssMI GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 604, 757
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 196, 278, 931
Bst6I CTCTTC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 19
BstDEI CTNAG 8 cut(s) 54, 90, 209, 402, 594, 629, 686, 809
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 1 cut(s) 599
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 8 cut(s) 28, 37, 208, 356, 472, 479, 685, 922
BstMAI GTCTC 6 cut(s) 38, 148, 531, 577, 747, 893
BstMBI GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 243, 472
BstSFI CTRYAG 2 cut(s) 277, 705
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 297, 691
BstX2I RGATCY 2 cut(s) 353, 682
BstYI RGATCY 2 cut(s) 353, 682
Bsu36I CCTNAGG 1 cut(s) 402
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 2 cut(s) 385, 676
BtgI CCRYGG 1 cut(s) 604
BtrI CACGTC 1 cut(s) 587
BtsCI GGATG 1 cut(s) 599
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 577
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 333
Csp6I GTAC 5 cut(s) 20, 269, 341, 772, 800
CviAII CATG 2 cut(s) 523, 605
CviQI GTAC 5 cut(s) 20, 269, 341, 772, 800
DdeI CTNAG 8 cut(s) 54, 90, 209, 402, 594, 629, 686, 809
DpnI GATC 8 cut(s) 27, 36, 207, 355, 471, 478, 684, 921
DpnII GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
DraI TTTAAA 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 604, 757
Eco31I GGTCTC 1 cut(s) 747
Eco32I GATATC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 408, 858
Eco81I CCTNAGG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 604, 757
ErhI CCWWGG 2 cut(s) 604, 757
Esp3I CGTCTC 2 cut(s) 577, 893
FaeI CATG 2 cut(s) 526, 608
FatI CATG 2 cut(s) 522, 604
FauNDI CATATG 1 cut(s) 815
Fnu4HI GCNGC 4 cut(s) 286, 674, 702, 705
FokI GGATG 1 cut(s) 586
Fsp4HI GCNGC 4 cut(s) 286, 674, 702, 705
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 332
GluI GCNGC 4 cut(s) 286, 674, 702, 705
GsuI CTGGAG 2 cut(s) 342, 601
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 2 cut(s) 385, 676
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 526, 608
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 20, 635
Hpy188I TCNGA 9 cut(s) 34, 39, 55, 91, 210, 300, 378, 490, 919
Hpy188III TCNNGA 8 cut(s) 147, 179, 220, 401, 426, 512, 680, 836
Hpy8I GTNNAC 2 cut(s) 20, 635
HpyAV CCTTC 3 cut(s) 269, 450, 893
HpyCH4III ACNGT 3 cut(s) 196, 278, 931
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 6 cut(s) 67, 113, 285, 500, 707, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 8 cut(s) 54, 90, 209, 402, 594, 629, 686, 809
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 2 cut(s) 526, 608
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
LmnI GCTCC 3 cut(s) 58, 835, 856
Lsp1109I GCAGC 2 cut(s) 297, 691
LweI GCATC 4 cut(s) 100, 272, 494, 756
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 1 cut(s) 161
MalI GATC 8 cut(s) 27, 36, 207, 355, 471, 478, 684, 921
MboI GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
MboII GAAGA 5 cut(s) 193, 380, 851, 854, 888
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 353, 682
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 5 cut(s) 114, 250, 345, 562, 658
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 331, 834
MroXI GAANNNNTTC 2 cut(s) 372, 873
MseI TTAA 4 cut(s) 273, 414, 494, 639
MslI CAYNNNNRTG 1 cut(s) 818
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 245, 474
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 701
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 604
NdeI CATATG 1 cut(s) 815
NdeII GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
NlaIII CATG 2 cut(s) 526, 608
NlaIV GGNNCC 1 cut(s) 858
NmuCI GTSAC 1 cut(s) 161
PdmI GAANNNNTTC 2 cut(s) 372, 873
PflMI CCANNNNNTGG 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 4 cut(s) 287, 675, 703, 706
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 858
PsrI GAACNNNNNNTAC 2 cut(s) 180, 212
PstI CTGCAG 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 353, 682
RsaI GTAC 5 cut(s) 21, 270, 342, 773, 801
RsaNI GTAC 5 cut(s) 20, 269, 341, 772, 800
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 4 cut(s) 273, 414, 494, 639
SatI GCNGC 4 cut(s) 286, 674, 702, 705
Sau3AI GATC 8 cut(s) 25, 34, 205, 353, 469, 476, 682, 919
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 245, 474
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 4 cut(s) 100, 272, 494, 756
SfcI CTRYAG 2 cut(s) 277, 705
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 5 cut(s) 114, 250, 345, 562, 658
SsiI CCGC 3 cut(s) 673, 701, 797
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 243, 472
StyI CCWWGG 2 cut(s) 604, 757
TaaI ACNGT 3 cut(s) 196, 278, 931
TaiI ACGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 204, 519
TasI AATT 5 cut(s) 114, 250, 345, 562, 658
TatI WGTACW 3 cut(s) 19, 268, 771
TauI GCSGC 2 cut(s) 676, 704
Tru1I TTAA 4 cut(s) 273, 414, 494, 639
Tru9I TTAA 4 cut(s) 273, 414, 494, 639
TscAI CASTG 2 cut(s) 295, 584
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 285, 704
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 17, 866, 888
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 2 cut(s) 295, 584
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 250
XmnI GAANNNNTTC 2 cut(s) 372, 873
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.